Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BZ167_RS09460 Genome accession   NZ_CP019626
Coordinates   1989710..1990000 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. 275     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1984710..1995000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZ167_RS09445 (BZ167_09485) - 1984931..1986256 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  BZ167_RS09450 (BZ167_09490) - 1986391..1987158 (-) 768 WP_017419495.1 TatD family hydrolase -
  BZ167_RS09455 (BZ167_09495) metG 1987235..1989226 (-) 1992 WP_060675319.1 methionine--tRNA ligase -
  BZ167_RS09460 (BZ167_09500) abrB 1989710..1990000 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  BZ167_RS09465 (BZ167_09505) rsmI 1990050..1990931 (-) 882 WP_061890392.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BZ167_RS09470 (BZ167_09510) - 1990906..1991205 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  BZ167_RS09475 (BZ167_09515) - 1991192..1991935 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BZ167_RS09480 (BZ167_09520) yabA 1991996..1992355 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  BZ167_RS09485 (BZ167_09525) ricT 1992370..1993197 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  BZ167_RS09490 (BZ167_09530) holB 1993200..1994189 (-) 990 WP_031379324.1 DNA polymerase III subunit delta' -
  BZ167_RS09495 (BZ167_09535) - 1994201..1994641 (-) 441 WP_004264730.1 DUF327 family protein -
  BZ167_RS09500 (BZ167_09540) darA 1994654..1994983 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=217351 BZ167_RS09460 WP_169510469.1 1989710..1990000(+) (abrB) [Bacillus sp. 275]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=217351 BZ167_RS09460 WP_169510469.1 1989710..1990000(+) (abrB) [Bacillus sp. 275]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment