Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BZ167_RS07875 Genome accession   NZ_CP019626
Coordinates   1663439..1663876 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. 275     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1658439..1668876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZ167_RS07860 (BZ167_07895) - 1661298..1661660 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  BZ167_RS07865 (BZ167_07900) hxlA 1661892..1662527 (+) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  BZ167_RS07870 (BZ167_07905) hxlB 1662524..1663081 (+) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  BZ167_RS07875 (BZ167_07910) nucA/comI 1663439..1663876 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BZ167_RS07880 (BZ167_07915) nin/comJ 1663897..1664295 (+) 399 WP_020955304.1 competence protein ComJ Regulator
  BZ167_RS07885 (BZ167_07920) - 1664336..1665772 (-) 1437 WP_060675311.1 family 1 glycosylhydrolase -
  BZ167_RS07890 (BZ167_07925) - 1665876..1666154 (-) 279 WP_077392023.1 YckD family protein -
  BZ167_RS07900 (BZ167_07940) - 1667560..1667994 (-) 435 WP_033575151.1 RDD family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=217346 BZ167_RS07875 WP_003156588.1 1663439..1663876(+) (nucA/comI) [Bacillus sp. 275]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=217346 BZ167_RS07875 WP_003156588.1 1663439..1663876(+) (nucA/comI) [Bacillus sp. 275]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCCCTTAAACATGTGCCTGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment