Detailed information NTG0217065

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CWI21_RS07090
• Genome accession: NZ_CP025055
• Coordinates: 1501907..1502911 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PB350
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1496907..1507911

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWI21_RS07060 (CWI21_07235)	fghA	1496999..1497850 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
CWI21_RS07065 (CWI21_07240)	ispF	1497921..1498394 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CWI21_RS07070 (CWI21_07245)	truD	1498391..1499458 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
CWI21_RS07075 (CWI21_07250)	surE	1499446..1500195 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CWI21_RS07080 (CWI21_07255)	-	1500228..1500863 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CWI21_RS07085 (CWI21_07260)	-	1500909..1501802 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
CWI21_RS07090 (CWI21_07265)	rpoS	1501907..1502911 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CWI21_RS07095 (CWI21_07270)	fdxA	1503338..1503661 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CWI21_RS07100 (CWI21_07275)	mutS	1503728..1506295 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
CWI21_RS07105 (CWI21_07285)	-	1506421..1507428 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=217065 CWI21_RS07090 WP_003113871.1 1501907..1502911(+) (rpoS) [Pseudomonas aeruginosa strain PB350]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=217065 CWI21_RS07090 WP_003113871.1 1501907..1502911(+) (rpoS) [Pseudomonas aeruginosa strain PB350]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653