Detailed information NTG0216867

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CWI23_RS07370
• Genome accession: NZ_CP025051
• Coordinates: 1525296..1526300 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PB353
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1520296..1531300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWI23_RS07340 (CWI23_07340)	fghA	1520388..1521239 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
CWI23_RS07345 (CWI23_07345)	ispF	1521310..1521783 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CWI23_RS07350 (CWI23_07350)	truD	1521780..1522847 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
CWI23_RS07355 (CWI23_07355)	surE	1522835..1523584 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CWI23_RS07360 (CWI23_07360)	-	1523617..1524252 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CWI23_RS07365 (CWI23_07365)	-	1524298..1525191 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
CWI23_RS07370 (CWI23_07370)	rpoS	1525296..1526300 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CWI23_RS07375 (CWI23_07375)	fdxA	1526727..1527050 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CWI23_RS07380 (CWI23_07380)	mutS	1527117..1529684 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
CWI23_RS07390 (CWI23_07390)	-	1529810..1530817 (-)	1008	WP_033993593.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=216867 CWI23_RS07370 WP_003113871.1 1525296..1526300(+) (rpoS) [Pseudomonas aeruginosa strain PB353]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=216867 CWI23_RS07370 WP_003113871.1 1525296..1526300(+) (rpoS) [Pseudomonas aeruginosa strain PB353]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTTTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAACTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCAGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653