Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CWI24_RS31760 Genome accession   NZ_CP025050
Coordinates   6593067..6593573 (-) Length   168 a.a.
NCBI ID   WP_023106692.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PB368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6588067..6598573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI24_RS31750 (CWI24_31750) - 6588897..6590948 (-) 2052 WP_043514729.1 ParB/RepB/Spo0J family partition protein -
  CWI24_RS32590 - 6591021..6591845 (-) 825 Protein_6175 DUF932 domain-containing protein -
  CWI24_RS31755 (CWI24_31755) - 6592404..6592799 (-) 396 WP_043514661.1 hypothetical protein -
  CWI24_RS31760 (CWI24_31760) radC 6593067..6593573 (-) 507 WP_023106692.1 RadC family protein Machinery gene
  CWI24_RS31765 (CWI24_31765) - 6593944..6595689 (-) 1746 WP_043514659.1 DUF2326 domain-containing protein -
  CWI24_RS31770 (CWI24_31770) - 6595686..6595913 (-) 228 WP_079383706.1 ABC-three component system middle component 6 -
  CWI24_RS31775 (CWI24_31775) - 6595910..6596653 (-) 744 WP_079383705.1 HNH endonuclease signature motif containing protein -
  CWI24_RS31780 (CWI24_31780) - 6596794..6597141 (-) 348 WP_043514657.1 helix-turn-helix domain-containing protein -
  CWI24_RS31785 (CWI24_31785) - 6597138..6597476 (-) 339 WP_052150990.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18440.05 Da        Isoelectric Point: 5.5956

>NTDB_id=216845 CWI24_RS31760 WP_023106692.1 6593067..6593573(-) (radC) [Pseudomonas aeruginosa strain PB368]
MSQLSLTSDASLLVRDDQGRYLPATADQILEAARLVIDQKNPRGALFTSPALVRDYLCTKLAGFEHEVFAALFLDTQHRL
IEYVELFRGTIDGASVYPREVVKEALRVNAAAVIFSHNHPSGNPEPSQADKVLTLRLKEALALVDVRTLDHIIVGGETTA
SFAERGLL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=216845 CWI24_RS31760 WP_023106692.1 6593067..6593573(-) (radC) [Pseudomonas aeruginosa strain PB368]
ATGTCGCAACTTTCTCTCACTTCCGATGCCTCGCTGCTGGTGCGTGACGACCAGGGGCGCTACCTGCCGGCGACTGCCGA
CCAGATTCTTGAAGCCGCACGCCTGGTCATCGACCAGAAGAACCCGCGCGGAGCACTGTTCACATCGCCGGCGCTGGTCA
GGGACTACCTGTGCACCAAGCTGGCCGGCTTCGAGCACGAAGTCTTCGCGGCGCTGTTCCTCGACACACAGCATCGGCTG
ATCGAATACGTCGAACTGTTCCGGGGCACCATCGACGGTGCATCGGTGTATCCGCGCGAAGTGGTCAAGGAAGCGCTGCG
GGTCAATGCAGCGGCGGTGATCTTCTCGCACAACCATCCGAGCGGGAATCCCGAGCCGAGCCAGGCCGACAAGGTGCTGA
CCCTGCGGCTCAAGGAGGCGCTGGCATTGGTGGACGTGCGCACACTGGATCACATCATCGTCGGCGGCGAGACCACAGCG
TCCTTCGCCGAACGGGGCCTGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.143

83.333

0.393