Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BW732_RS09280 Genome accession   NZ_CP019609
Coordinates   1961547..1963223 (+) Length   558 a.a.
NCBI ID   WP_077276490.1    Uniprot ID   A0A1Q2D7T9
Organism   Vagococcus penaei strain CD276T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1956547..1968223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW732_RS09250 (BW732_09325) nusB 1956797..1957231 (+) 435 WP_077276485.1 transcription antitermination factor NusB -
  BW732_RS09255 (BW732_09330) folD 1957345..1958205 (+) 861 WP_077276486.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  BW732_RS09260 (BW732_09335) xseA 1958207..1959556 (+) 1350 WP_077276487.1 exodeoxyribonuclease VII large subunit -
  BW732_RS09265 (BW732_09340) - 1959557..1959784 (+) 228 WP_077276488.1 exodeoxyribonuclease VII small subunit -
  BW732_RS09270 (BW732_09345) - 1959785..1960681 (+) 897 WP_418369023.1 polyprenyl synthetase family protein -
  BW732_RS09275 (BW732_09350) - 1960690..1961532 (+) 843 WP_077276901.1 TlyA family RNA methyltransferase -
  BW732_RS09280 (BW732_09355) recN 1961547..1963223 (+) 1677 WP_077276490.1 DNA repair protein RecN Machinery gene
  BW732_RS09285 (BW732_09360) - 1963292..1963402 (-) 111 WP_077276491.1 DUF4044 domain-containing protein -
  BW732_RS09290 (BW732_09365) - 1963608..1963979 (+) 372 WP_077276492.1 DUF3397 domain-containing protein -
  BW732_RS09295 (BW732_09370) mraZ 1964118..1964549 (+) 432 WP_077276493.1 division/cell wall cluster transcriptional repressor MraZ -
  BW732_RS09300 (BW732_09375) rsmH 1964574..1965542 (+) 969 WP_077276494.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  BW732_RS09305 (BW732_09380) ftsL 1965544..1965930 (+) 387 WP_077276495.1 cell division protein FtsL -
  BW732_RS09310 (BW732_09385) - 1965930..1967828 (+) 1899 WP_077276496.1 peptidoglycan D,D-transpeptidase FtsI family protein -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 63305.86 Da        Isoelectric Point: 4.6192

>NTDB_id=216828 BW732_RS09280 WP_077276490.1 1961547..1963223(+) (recN) [Vagococcus penaei strain CD276T]
MIQELSVQDFAIISSLTIQFKGGMTVLTGETGAGKSIIIDAMGLLVGGRGSSDFIRDGTERCRIEGAFYVENQLPIKAYL
TEIGVDMPDELLILQREIFRTGRNICRINGQLVNTKILREVGHRLVDIHGQNEHQELMDATQHLGLLDDFDKSMLQPLLA
NYQDLYQQYMHVSQQIDSYQTHEKEFAQRMDMLQFQFDEIGTANLEVDEDTRLLEERSKLMNYQKIVQTLSSSYDALEGE
GAQTLDLVGRVMTNLEQIESLDTDYAETTELVRNAYYLLQEAAGRLSSHLDVLEMDDGRLDEVETRLDTIRQLKRKYGEQ
ITDILAYFDSIKQELELTTTDTIQLDELFQLKEHLFGELTVAADKLTNERKKVAQRLEKAILEQLKGLYMENTQFKVHFQ
LTTPKFTRLGQDKIEFYISTNIGEALKPLAKVASGGELSRLMLALKTIFSQTQAITSIIFDEVDTGVSGRVAQSIAEKIH
QIGENSQVLCITHLPQVAAEADTQYFIEKRVVDDRTETHVRELNNDGRVKEIARMLAGSEVTSLTLQHAKELLKLAHD

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=216828 BW732_RS09280 WP_077276490.1 1961547..1963223(+) (recN) [Vagococcus penaei strain CD276T]
ATGATTCAGGAATTATCTGTACAGGACTTTGCAATTATTTCAAGTTTAACGATTCAATTTAAGGGTGGTATGACCGTCCT
AACAGGTGAAACTGGTGCTGGTAAATCAATTATTATCGATGCCATGGGATTATTGGTAGGTGGTCGTGGCTCCAGTGATT
TTATTCGCGATGGGACGGAACGGTGCCGAATTGAAGGAGCATTTTATGTTGAAAACCAATTGCCTATTAAAGCATATCTC
ACAGAAATTGGTGTCGACATGCCGGACGAATTACTAATTTTACAACGTGAAATTTTTAGAACTGGTCGTAATATTTGCCG
AATCAATGGTCAACTCGTCAATACGAAGATTCTACGTGAAGTAGGGCACCGTTTAGTTGATATTCATGGTCAAAACGAGC
ATCAAGAATTGATGGATGCCACGCAGCATTTAGGACTACTGGATGATTTTGATAAGTCAATGTTACAACCATTATTGGCA
AATTATCAGGATCTCTATCAACAATATATGCATGTTAGTCAACAGATTGATTCCTATCAGACTCATGAAAAAGAGTTTGC
GCAACGTATGGACATGCTACAGTTTCAATTTGATGAGATAGGGACGGCCAATCTTGAGGTTGATGAAGATACACGCTTAC
TGGAAGAACGTAGTAAACTGATGAATTACCAAAAAATTGTGCAGACCCTTAGTAGTAGCTATGATGCTCTAGAAGGTGAA
GGTGCGCAAACGCTTGATTTAGTTGGTCGTGTCATGACAAATCTCGAACAAATCGAATCACTAGATACAGACTATGCTGA
AACAACTGAATTAGTCCGTAATGCGTATTATTTACTGCAGGAAGCAGCTGGTAGACTATCTAGTCATTTAGATGTGTTAG
AGATGGATGATGGCAGATTAGATGAAGTTGAAACAAGATTAGATACTATTCGTCAGTTGAAACGTAAATATGGGGAACAA
ATTACCGATATTTTAGCTTATTTTGATAGTATTAAACAAGAACTTGAGTTGACGACTACTGACACAATACAGCTAGACGA
ATTATTTCAGTTAAAAGAACATTTATTTGGCGAATTAACTGTAGCCGCTGATAAATTAACCAATGAACGAAAAAAAGTCG
CTCAGCGCTTAGAAAAAGCAATTTTGGAGCAATTAAAAGGTTTATATATGGAAAACACACAATTTAAAGTACACTTTCAA
CTGACAACTCCAAAGTTTACTCGCTTAGGGCAAGATAAAATTGAATTTTATATTTCAACCAATATTGGAGAAGCATTAAA
ACCCTTAGCTAAAGTTGCATCTGGAGGTGAACTGTCCCGATTGATGTTAGCACTTAAGACAATTTTTTCTCAAACTCAAG
CAATTACGAGTATTATCTTTGATGAAGTTGATACTGGAGTTAGTGGTCGTGTCGCACAGTCAATTGCAGAAAAAATTCAT
CAAATTGGTGAAAATTCACAAGTTCTATGTATTACTCACTTACCACAAGTCGCTGCCGAAGCTGACACACAGTATTTTAT
TGAAAAGCGTGTGGTTGATGACCGAACAGAAACGCATGTTAGAGAATTGAATAATGATGGTAGAGTAAAAGAAATTGCAC
GTATGTTAGCGGGAAGTGAAGTGACTTCTTTAACCTTACAGCATGCAAAAGAGTTATTAAAATTAGCGCATGATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q2D7T9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.368

100

0.484

Multiple sequence alignment