Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BW732_RS04425 Genome accession   NZ_CP019609
Coordinates   934692..936062 (-) Length   456 a.a.
NCBI ID   WP_077275647.1    Uniprot ID   -
Organism   Vagococcus penaei strain CD276T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 929692..941062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW732_RS04405 (BW732_04450) cysS 929801..931219 (-) 1419 WP_077275643.1 cysteine--tRNA ligase -
  BW732_RS04410 (BW732_04455) epsC 931227..931742 (-) 516 WP_077275644.1 serine O-acetyltransferase EpsC -
  BW732_RS04415 (BW732_04460) gltX 932018..933481 (-) 1464 WP_077275645.1 glutamate--tRNA ligase -
  BW732_RS04420 (BW732_04465) - 933572..934672 (-) 1101 WP_077275646.1 PIN/TRAM domain-containing protein -
  BW732_RS04425 (BW732_04470) radA 934692..936062 (-) 1371 WP_077275647.1 DNA repair protein RadA Machinery gene
  BW732_RS04430 (BW732_04475) - 936146..936673 (-) 528 WP_077275648.1 dUTP diphosphatase -
  BW732_RS04435 (BW732_04480) - 936855..938821 (-) 1967 Protein_878 KUP/HAK/KT family potassium transporter -
  BW732_RS04440 (BW732_04485) proB 939333..940139 (+) 807 WP_077275649.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50352.57 Da        Isoelectric Point: 6.4082

>NTDB_id=216815 BW732_RS04425 WP_077275647.1 934692..936062(-) (radA) [Vagococcus penaei strain CD276T]
MAKKKRTEYICQNCGYISPKYLGRCPNCGEWNSLVEEVSDEKPTRHSRVSLAGKKNKAEKLNDVVRTREARVKTDLGELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLSKLEGDVLYVSGEESAQQIKMRAERLDDGANDFYVYSETDMSSVRQ
TIDELRPDYVIIDSIQTMVHPDIDSVAGSVSQVRETTAELMQIAKTNQIAIFIVGHVTKEGSLAGPRMLEHMVDTVLYFE
GDRHHTYRILRAVKNRFGSTNEIGIFEMREQGLVEVTNPSEAFLEERIDGATGSSIVCSMEGTRPILAEVQALITPSVFG
NAKRTATGLDYNRVSLIMAVLEKRAGLMLQNQDAYLKAVGGVKLDEPAIDLSIAISIASSYKDRGTSPFECFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKKIYVPKNSLHGWRVPTDIEVVGVETIAEVLRKVFQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=216815 BW732_RS04425 WP_077275647.1 934692..936062(-) (radA) [Vagococcus penaei strain CD276T]
ATGGCTAAGAAAAAGCGTACAGAATATATTTGTCAAAACTGCGGGTATATCTCACCTAAATACTTAGGCCGTTGTCCCAA
TTGTGGAGAATGGAATTCGTTAGTAGAAGAGGTATCCGACGAAAAACCAACGCGACACAGTCGAGTTAGTTTAGCAGGGA
AAAAAAATAAAGCTGAAAAATTGAATGATGTTGTTCGCACGCGTGAAGCTCGAGTGAAAACAGACTTAGGCGAATTGAAT
CGTGTGTTAGGTGGCGGAGTTGTTCCAGGGTCTTTAGTCTTAATTGGTGGTGACCCAGGAATTGGAAAGTCGACACTTCT
ATTACAAGTGTCTCAACAGCTAAGTAAGCTAGAAGGTGACGTTTTATATGTGTCGGGAGAAGAAAGTGCCCAACAAATAA
AAATGCGTGCTGAACGTCTGGATGACGGAGCAAATGATTTTTATGTGTATTCTGAGACAGACATGAGTTCAGTTAGACAA
ACAATCGATGAGTTGCGTCCAGATTATGTCATTATTGACTCTATTCAAACAATGGTTCATCCCGATATTGATAGTGTTGC
TGGTAGTGTTAGCCAAGTAAGAGAGACAACTGCTGAGTTAATGCAAATTGCCAAAACGAATCAAATCGCAATCTTTATTG
TCGGTCACGTCACAAAAGAAGGGTCACTAGCCGGTCCGAGAATGTTGGAACATATGGTTGACACTGTGCTTTACTTTGAA
GGTGATCGACACCATACGTATCGTATTTTACGAGCAGTAAAAAACCGTTTTGGTTCAACAAATGAAATTGGGATTTTTGA
GATGCGTGAGCAAGGACTTGTCGAAGTGACGAATCCCTCTGAGGCCTTTTTAGAAGAAAGGATTGACGGCGCAACTGGCT
CTTCAATTGTTTGTTCGATGGAAGGTACGCGACCAATTCTAGCAGAGGTACAAGCTCTAATCACACCATCTGTCTTTGGT
AATGCGAAACGAACAGCAACGGGACTTGATTACAATCGTGTGTCGTTAATTATGGCAGTCCTTGAAAAACGTGCGGGATT
AATGTTGCAAAACCAAGATGCTTATCTAAAAGCAGTTGGTGGGGTGAAATTAGATGAGCCAGCAATTGACTTATCGATTG
CTATCAGTATTGCATCTAGTTATAAAGATCGTGGTACATCGCCTTTTGAGTGCTTTGTTGGTGAAATTGGCTTGACCGGT
GAAATTAGACGGGTTAATCGCATTGAACAACGTGTTGCTGAAGCACAAAAATTAGGCTTTAAGAAAATTTATGTTCCGAA
GAATAGTTTACATGGTTGGCGTGTTCCAACTGACATTGAAGTTGTTGGTGTCGAAACAATCGCTGAAGTGTTGCGGAAGG
TTTTCCAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

74.945

99.781

0.748
  radA Streptococcus pneumoniae D39

74.945

99.781

0.748
  radA Streptococcus pneumoniae R6

74.945

99.781

0.748
  radA Streptococcus pneumoniae TIGR4

74.945

99.781

0.748
  radA Streptococcus mitis NCTC 12261

74.945

99.781

0.748
  radA Streptococcus mitis SK321

74.945

99.781

0.748
  radA Bacillus subtilis subsp. subtilis str. 168

65.639

99.561

0.654

Multiple sequence alignment