Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CWI24_RS10510 Genome accession   NZ_CP025050
Coordinates   2178080..2178694 (-) Length   204 a.a.
NCBI ID   WP_100857934.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PB368     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2173080..2183694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI24_RS10485 (CWI24_10485) - 2173537..2173800 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  CWI24_RS10490 (CWI24_10490) topA 2173891..2176497 (+) 2607 WP_100857933.1 type I DNA topoisomerase -
  CWI24_RS10495 (CWI24_10495) - 2176604..2177122 (+) 519 WP_003091199.1 DUF6586 family protein -
  CWI24_RS10500 (CWI24_10500) - 2177328..2177561 (+) 234 WP_003109483.1 hypothetical protein -
  CWI24_RS10505 (CWI24_10505) sulA 2177583..2178068 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  CWI24_RS10510 (CWI24_10510) dinR/lexA 2178080..2178694 (-) 615 WP_100857934.1 transcriptional repressor LexA Regulator
  CWI24_RS10515 (CWI24_10515) psrA 2178926..2179627 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  CWI24_RS10520 (CWI24_10520) nagZ 2179829..2180827 (+) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  CWI24_RS10525 (CWI24_10525) - 2180839..2181576 (+) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  CWI24_RS10530 (CWI24_10530) - 2181623..2182252 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.01 Da        Isoelectric Point: 7.3275

>NTDB_id=216778 CWI24_RS10510 WP_100857934.1 2178080..2178694(-) (dinR/lexA) [Pseudomonas aeruginosa strain PB368]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAKEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=216778 CWI24_RS10510 WP_100857934.1 2178080..2178694(-) (dinR/lexA) [Pseudomonas aeruginosa strain PB368]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCAAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATTCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGACGCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(83-196)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387