Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBL520_RS10320 Genome accession   NZ_CP019596
Coordinates   2295504..2297333 (-) Length   609 a.a.
NCBI ID   WP_019727589.1    Uniprot ID   -
Organism   Bifidobacterium breve strain LMC520     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2290504..2302333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBL520_RS11675 - 2291074..2291232 (+) 159 WP_003829623.1 hypothetical protein -
  BBL520_RS10300 (BBL520_10300) rsmI 2291352..2292371 (-) 1020 WP_052787462.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BBL520_RS10310 (BBL520_10310) - 2293031..2294449 (-) 1419 WP_106641179.1 MFS transporter -
  BBL520_RS10315 (BBL520_10315) - 2294554..2295495 (+) 942 WP_052828799.1 FAD:protein FMN transferase -
  BBL520_RS10320 (BBL520_10320) rcrQ 2295504..2297333 (-) 1830 WP_019727589.1 ABC transporter ATP-binding protein Regulator
  BBL520_RS10325 (BBL520_10325) rcrP 2297465..2299333 (-) 1869 WP_077149672.1 ABC transporter ATP-binding protein Regulator
  BBL520_RS10330 (BBL520_10330) - 2299517..2300038 (-) 522 WP_077149673.1 MarR family transcriptional regulator -
  BBL520_RS11680 (BBL520_10340) - 2300690..2300824 (+) 135 WP_226790693.1 DUF1684 domain-containing protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66564.94 Da        Isoelectric Point: 5.9488

>NTDB_id=216771 BBL520_RS10320 WP_019727589.1 2295504..2297333(-) (rcrQ) [Bifidobacterium breve strain LMC520]
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNS
IDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRVTNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKVSQKYFTRQQVALGDVNGHVEEMYAGHTIVK
AYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVA
IVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISAC
KAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=216771 BBL520_RS10320 WP_019727589.1 2295504..2297333(-) (rcrQ) [Bifidobacterium breve strain LMC520]
ATGCCAAGAGGACCTATGGGCCGCGGAGGCGCGGTCGAAAAACCACAGGATTTCGGCAAAGTCATGGGCAAACTCGTCCG
CTTTTGCCGCAAATACGTTCCTGCCATCATCATCGCGCTTGTGCTGGGCGCGGCTGGCACCATCTGCCAGATTATCGGCC
CGGACAAGCTCAAGGACATGACCAATGAGATCACCAAAGGTCTGCCTGCGGTAGTGCATGGCAAGCCGGTGCTCAATTCC
ATCGACATGGGCGCGGTTGCTCGTATCGGCTGGCTGCTTGTGGTGCTGTATGTGGGCTACGCGTTGCTCAGCTACATTCA
GAGCTGGATGATGGCCACCGTTACGCAGCGCACTGCGCAGGAGTTGCGTGAGTCGATCAGCAAGAAGATCAACAAGCTGC
CGCTCAGTTACTTCGACAAAGTCAGCTACGGCGACGTGCTTTCTCGCGTCACCAACGATGTGGACGCTATCGGCCAGACG
CTGGGCCAGTCGCTCGGATCGCTGATCACATCCGCGACGCTGTTCGTGGGCGCATTGGTCATGATGTTCTACAACAACTG
GATCATGGCGCTGTGCGCAATCGGTTCAAGCATCATCGGCCTGATCATCATGATGGTCATTATGAAGGTCTCGCAAAAGT
ACTTCACCCGCCAGCAGGTCGCGTTGGGTGATGTGAACGGCCATGTGGAGGAGATGTACGCCGGTCACACCATCGTCAAG
GCATACAACGGCGAGGCGGATTCTATTCGTCGGTTCGAGCGCTACAACGCGGATCTGTACGATTCCGGCTGGAAGTCGCA
GTTCTTGTCTGGTCTGATGATGCCGCTGATGAACTTCGTCGGTAATTTCGGCTATGTGGTGGTGTGCGTGGTGGGTGCCG
CGCTCGCCATGGACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATATCCGCCTGTTTACGCAGCCGCTC
TCGCAGTTTGCGCAGGCGTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAACGCGTATTCGGATTCCTCGAAGAGTC
GGAAATGGCTGACGAATCCGGCAAGCAGGCGCTGCTTGGCGCTCAAGGCCATGAGGTGCACGGCGATGTGGAATTCAGTC
ACGTGCGCTTTGAATATGAGGCCGGCAAGCCGATTATCAACGACTTCTCCGCTTCTGTCTCCTCCGGTCAGAAGGTTGCT
ATTGTGGGCCCGACCGGTGCCGGTAAGACCACTATGGTCAACCTGCTTATGCGCTTCTACGAGATTGCCGGTGGCTCGAT
CGCCATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACCT
GGATCTTTAATGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTTACGGATGAGCAGATCATCAGCGCATGC
AAAGCTGTGGGATTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGAGAATTCGTCGCTGTC
CGCCGGCCAGAAGCAGCTGCTCACCATTGCCCGCGCAATGGTACAGGATGCACCGATTCTGATCCTCGATGAGGCCACAT
CTTCGGTCGATACCCGTACTGAAGAGTTGATTCAGAAGGCCATGGACGCGTTGACCGTGGACCGTACCTCCTTCGTGATC
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAATCACGGCGATGTGATCGAACGCGGCACGCA
TGAGGAGTTGCTGGCTGCTGGTGGATTCTACGCTGATTTGTACAACAGCCAGTTCGCGTTGGCGGGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.846

96.059

0.517

Multiple sequence alignment