Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBL520_RS10325 Genome accession   NZ_CP019596
Coordinates   2297465..2299333 (-) Length   622 a.a.
NCBI ID   WP_077149672.1    Uniprot ID   -
Organism   Bifidobacterium breve strain LMC520     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2292465..2304333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBL520_RS10310 (BBL520_10310) - 2293031..2294449 (-) 1419 WP_106641179.1 MFS transporter -
  BBL520_RS10315 (BBL520_10315) - 2294554..2295495 (+) 942 WP_052828799.1 FAD:protein FMN transferase -
  BBL520_RS10320 (BBL520_10320) rcrQ 2295504..2297333 (-) 1830 WP_019727589.1 ABC transporter ATP-binding protein Regulator
  BBL520_RS10325 (BBL520_10325) rcrP 2297465..2299333 (-) 1869 WP_077149672.1 ABC transporter ATP-binding protein Regulator
  BBL520_RS10330 (BBL520_10330) - 2299517..2300038 (-) 522 WP_077149673.1 MarR family transcriptional regulator -
  BBL520_RS11680 (BBL520_10340) - 2300690..2300824 (+) 135 WP_226790693.1 DUF1684 domain-containing protein -
  BBL520_RS10345 (BBL520_10345) - 2300961..2302484 (-) 1524 WP_060618910.1 amino acid permease -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68168.78 Da        Isoelectric Point: 5.3282

>NTDB_id=216772 BBL520_RS10325 WP_077149672.1 2297465..2299333(-) (rcrP) [Bifidobacterium breve strain LMC520]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVACAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMAMVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRAADIAKTGQTGTVEFRNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTSAGRKREALQLATDAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQRQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAK
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHRELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=216772 BBL520_RS10325 WP_077149672.1 2297465..2299333(-) (rcrP) [Bifidobacterium breve strain LMC520]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACGCCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAAATGCTGCTGGTCTCGCTCGGCTCGGTCGCCTGCGCGATCATCACCGGTTACATCGCGGCG
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTGCGCTCGCTCGAATTCCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATCCTGCTGGTCGCTGTCGTAATCCTCATGGCGATGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCGAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTCATGAACACTGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCTCGTGCCGACGTGTCCGCGCAGCGCGTGATGGAAGTGCTCAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGACATCGCCAAGACCGGGCAGACGGGCACTGTGGAATTCAGGAACGT
GAGCTTTACCTACCCGGATTCGCGTGAGGCCATGCTGCAGGATATCAACTTCAAAGCCGAGAAGGGCCAGACCGTGGCAT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTATCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTATGTACCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAACATCAGCTACGGCGACAAGCCCGGAGAGAACGACGCGGTCGAACTGGCGGATA
CTTCCACTTCCGCCGGCCGCAAGCGCGAGGCGCTTCAGCTGGCCACCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAGACAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCCGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCAAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTCGTGGGCCAAGGCACGCATAGGGAGCTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-542)

ABC transporter transmembrane region (ABC_membrane)

(53-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.101

100

0.489

Multiple sequence alignment