Detailed information NTG0216769

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CWI24_RS07260
• Genome accession: NZ_CP025050
• Coordinates: 1501903..1502907 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PB368
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1496903..1507907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWI24_RS07230 (CWI24_07230)	fghA	1496995..1497846 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
CWI24_RS07235 (CWI24_07235)	ispF	1497917..1498390 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CWI24_RS07240 (CWI24_07240)	truD	1498387..1499454 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
CWI24_RS07245 (CWI24_07245)	surE	1499442..1500191 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CWI24_RS07250 (CWI24_07250)	-	1500224..1500859 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CWI24_RS07255 (CWI24_07255)	-	1500905..1501798 (+)	894	WP_023436003.1	peptidoglycan DD-metalloendopeptidase family protein	-
CWI24_RS07260 (CWI24_07260)	rpoS	1501903..1502907 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CWI24_RS07265 (CWI24_07265)	fdxA	1503334..1503657 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CWI24_RS07270 (CWI24_07270)	mutS	1503724..1506291 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
CWI24_RS07280 (CWI24_07280)	-	1506417..1507424 (-)	1008	WP_043084174.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=216769 CWI24_RS07260 WP_003113871.1 1501903..1502907(+) (rpoS) [Pseudomonas aeruginosa strain PB368]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=216769 CWI24_RS07260 WP_003113871.1 1501903..1502907(+) (rpoS) [Pseudomonas aeruginosa strain PB368]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653