Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CWI24_RS01735 Genome accession   NZ_CP025050
Coordinates   377946..378311 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PB368     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 372946..383311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI24_RS01720 (CWI24_01720) pilK 374290..375165 (-) 876 WP_003128960.1 type 4 fimbrial methyltransferase PilK -
  CWI24_RS01725 (CWI24_01725) pilJ 375226..377274 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  CWI24_RS01730 (CWI24_01730) - 377359..377895 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  CWI24_RS01735 (CWI24_01735) pilH 377946..378311 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  CWI24_RS01740 (CWI24_01740) pilG 378358..378765 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  CWI24_RS01745 (CWI24_01745) gshB 379020..379973 (+) 954 WP_043085603.1 glutathione synthase -
  CWI24_RS01750 (CWI24_01750) - 380120..381013 (+) 894 WP_043085601.1 energy transducer TonB -
  CWI24_RS01755 (CWI24_01755) - 381062..381631 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  CWI24_RS01760 (CWI24_01760) ruvX 381631..382065 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  CWI24_RS01765 (CWI24_01765) pyrR 382177..382689 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=216754 CWI24_RS01735 WP_003084587.1 377946..378311(-) (pilH) [Pseudomonas aeruginosa strain PB368]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=216754 CWI24_RS01735 WP_003084587.1 377946..378311(-) (pilH) [Pseudomonas aeruginosa strain PB368]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364