Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CWI33_RS15870 Genome accession   NZ_CP025048
Coordinates   3140607..3141083 (-) Length   158 a.a.
NCBI ID   WP_001186780.1    Uniprot ID   -
Organism   Escherichia coli strain SC516     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3135607..3146083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI33_RS25420 - 3136940..3137054 (-) 115 Protein_2911 integrase -
  CWI33_RS15835 (CWI33_15830) - 3137429..3138271 (-) 843 WP_001529559.1 DUF4942 domain-containing protein -
  CWI33_RS15840 (CWI33_15835) - 3138356..3138553 (-) 198 WP_023563519.1 DUF957 domain-containing protein -
  CWI33_RS15845 (CWI33_15840) - 3138629..3138778 (-) 150 Protein_2914 DUF5983 family protein -
  CWI33_RS15850 (CWI33_15845) - 3138775..3139152 (-) 378 WP_057109034.1 TA system toxin CbtA family protein -
  CWI33_RS15855 (CWI33_15850) - 3139242..3139610 (-) 369 WP_063112944.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CWI33_RS15860 (CWI33_15855) - 3139660..3140304 (-) 645 WP_045146861.1 hypothetical protein -
  CWI33_RS15865 (CWI33_15860) - 3140323..3140544 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CWI33_RS15870 (CWI33_15865) radC 3140607..3141083 (-) 477 WP_001186780.1 RadC family protein Machinery gene
  CWI33_RS15875 (CWI33_15870) - 3141099..3141584 (-) 486 WP_000213716.1 antirestriction protein -
  CWI33_RS15880 (CWI33_15875) - 3141676..3142493 (-) 818 Protein_2921 DUF932 domain-containing protein -
  CWI33_RS24770 - 3142594..3142746 (-) 153 WP_001696589.1 DUF905 family protein -
  CWI33_RS15885 (CWI33_15880) - 3142752..3143429 (-) 678 WP_063073422.1 hypothetical protein -
  CWI33_RS15890 (CWI33_15885) - 3143577..3144257 (-) 681 WP_001282919.1 WYL domain-containing protein -
  CWI33_RS15895 (CWI33_15890) - 3144460..3145344 (-) 885 WP_000010408.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.21 Da        Isoelectric Point: 6.9859

>NTDB_id=216734 CWI33_RS15870 WP_001186780.1 3140607..3141083(-) (radC) [Escherichia coli strain SC516]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHESGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=216734 CWI33_RS15870 WP_001186780.1 3140607..3141083(-) (radC) [Escherichia coli strain SC516]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAGTCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392