Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   BZK08_RS10720 Genome accession   NZ_CP019594
Coordinates   2070786..2071502 (+) Length   238 a.a.
NCBI ID   WP_000688487.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD1539     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2065786..2076502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZK08_RS10690 (BZK08_11005) - 2066053..2066679 (+) 627 WP_000522384.1 nitroreductase family protein -
  BZK08_RS10695 (BZK08_11010) - 2066987..2067772 (+) 786 WP_000867947.1 carbon-nitrogen family hydrolase -
  BZK08_RS14680 (BZK08_11015) - 2068374..2068508 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  BZK08_RS10705 (BZK08_11020) agrB 2068744..2069313 (+) 570 WP_001105708.1 accessory gene regulator AgrB -
  BZK08_RS10710 (BZK08_11025) - 2069310..2069450 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  BZK08_RS10715 (BZK08_11030) - 2069475..2070767 (+) 1293 WP_001825886.1 GHKL domain-containing protein -
  BZK08_RS10720 (BZK08_11035) agrA 2070786..2071502 (+) 717 WP_000688487.1 LytTR family DNA-binding domain-containing protein Regulator
  BZK08_RS10725 (BZK08_11040) - 2071876..2072835 (-) 960 WP_001253294.1 carbohydrate kinase -
  BZK08_RS10730 (BZK08_11045) - 2072832..2074316 (-) 1485 WP_084568225.1 sucrose-6-phosphate hydrolase -
  BZK08_RS10735 (BZK08_11050) - 2074465..2075415 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27963.94 Da        Isoelectric Point: 5.8625

>NTDB_id=216718 BZK08_RS10720 WP_000688487.1 2070786..2071502(+) (agrA) [Staphylococcus aureus strain GD1539]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLDSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=216718 BZK08_RS10720 WP_000688487.1 2070786..2071502(+) (agrA) [Staphylococcus aureus strain GD1539]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGACAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment