Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CWI33_RS09270 Genome accession   NZ_CP025048
Coordinates   1843265..1843741 (+) Length   158 a.a.
NCBI ID   WP_001186724.1    Uniprot ID   -
Organism   Escherichia coli strain SC516     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838265..1848741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI33_RS09240 (CWI33_09240) - 1838752..1839738 (-) 987 WP_029396404.1 hypothetical protein -
  CWI33_RS09245 (CWI33_09245) - 1839845..1840729 (+) 885 WP_000010399.1 GTPase -
  CWI33_RS09250 (CWI33_09250) - 1840848..1841525 (+) 678 WP_001097362.1 hypothetical protein -
  CWI33_RS09255 (CWI33_09255) - 1841531..1841764 (+) 234 WP_001278288.1 DUF905 family protein -
  CWI33_RS09260 (CWI33_09260) - 1841854..1842672 (+) 819 WP_100881928.1 DUF932 domain-containing protein -
  CWI33_RS09265 (CWI33_09265) - 1842764..1843249 (+) 486 WP_032216512.1 antirestriction protein -
  CWI33_RS09270 (CWI33_09270) radC 1843265..1843741 (+) 477 WP_001186724.1 RadC family protein Machinery gene
  CWI33_RS09275 (CWI33_09275) - 1843810..1844031 (+) 222 WP_001601167.1 DUF987 domain-containing protein -
  CWI33_RS09280 (CWI33_09280) - 1844050..1844694 (+) 645 Protein_1723 antitoxin of toxin-antitoxin stability system -
  CWI33_RS09285 (CWI33_09285) - 1844713..1845081 (+) 369 WP_032216526.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CWI33_RS09290 (CWI33_09290) cbtA 1845171..1845548 (+) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CWI33_RS09295 (CWI33_09295) - 1845545..1845694 (+) 150 Protein_1726 DUF5983 family protein -
  CWI33_RS09300 (CWI33_09300) - 1845770..1845967 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  CWI33_RS09305 (CWI33_09305) - 1846052..1846894 (+) 843 WP_001280501.1 DUF4942 domain-containing protein -
  CWI33_RS09310 (CWI33_09310) yghD 1847176..1847712 (-) 537 WP_063091691.1 GspM family type II secretion system protein YghD -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=216696 CWI33_RS09270 WP_001186724.1 1843265..1843741(+) (radC) [Escherichia coli strain SC516]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=216696 CWI33_RS09270 WP_001186724.1 1843265..1843741(+) (radC) [Escherichia coli strain SC516]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAGACCCTCTTCACAGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCAGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCTGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment