Detailed information NTG0216692

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CWI33_RS07825
• Genome accession: NZ_CP025048
• Coordinates: 1566375..1567367 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SC516
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1561375..1572367

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWI33_RS07805 (CWI33_07805)	otnK	1562150..1563412 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
CWI33_RS07810 (CWI33_07810)	ygbL	1563409..1564047 (+)	639	WP_001278994.1	aldolase	-
CWI33_RS07815 (CWI33_07815)	ygbM	1564052..1564828 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CWI33_RS07820 (CWI33_07820)	ygbN	1564917..1566281 (+)	1365	WP_072643368.1	GntP family transporter	-
CWI33_RS07825 (CWI33_07825)	rpoS	1566375..1567367 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CWI33_RS07830 (CWI33_07830)	nlpD	1567430..1568524 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CWI33_RS07835 (CWI33_07835)	pcm	1568709..1569335 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CWI33_RS07840 (CWI33_07840)	surE	1569329..1570090 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CWI33_RS07845 (CWI33_07845)	truD	1570071..1571120 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
CWI33_RS07850 (CWI33_07850)	ispF	1571117..1571596 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CWI33_RS07855 (CWI33_07855)	ispD	1571596..1572305 (-)	710	Protein_1460	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=216692 CWI33_RS07825 WP_000081550.1 1566375..1567367(-) (rpoS) [Escherichia coli strain SC516]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=216692 CWI33_RS07825 WP_000081550.1 1566375..1567367(-) (rpoS) [Escherichia coli strain SC516]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715