Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CWI33_RS07530 Genome accession   NZ_CP025048
Coordinates   1513397..1513912 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain SC516     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508397..1518912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI33_RS07505 (CWI33_07505) ygaZ 1508796..1509533 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CWI33_RS07510 (CWI33_07510) ygaH 1509523..1509858 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CWI33_RS07515 (CWI33_07515) emrR 1509949..1510479 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CWI33_RS07520 (CWI33_07520) emrA 1510606..1511778 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CWI33_RS07525 (CWI33_07525) emrB 1511795..1513333 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CWI33_RS07530 (CWI33_07530) luxS 1513397..1513912 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CWI33_RS07535 (CWI33_07535) gshA 1514062..1515618 (-) 1557 WP_000611781.1 glutamate--cysteine ligase -
  CWI33_RS07540 (CWI33_07540) yqaA 1515691..1516119 (-) 429 WP_001287454.1 YqaA family protein -
  CWI33_RS07545 (CWI33_07545) yqaB 1516116..1516682 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CWI33_RS07580 (CWI33_07580) csrA 1518009..1518194 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=216689 CWI33_RS07530 WP_001130211.1 1513397..1513912(-) (luxS) [Escherichia coli strain SC516]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=216689 CWI33_RS07530 WP_001130211.1 1513397..1513912(-) (luxS) [Escherichia coli strain SC516]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731