Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CWI33_RS04050 Genome accession   NZ_CP025048
Coordinates   775291..775767 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain SC516     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 770291..780767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI33_RS25155 (CWI33_04000) - 770824..770997 (-) 174 Protein_743 cobalamin biosynthesis protein -
  CWI33_RS25160 - 770976..771164 (-) 189 Protein_744 IS4 family transposase -
  CWI33_RS25000 (CWI33_04005) - 771137..771301 (-) 165 WP_001128468.1 hypothetical protein -
  CWI33_RS04025 (CWI33_04025) - 772563..773246 (+) 684 WP_000775500.1 hypothetical protein -
  CWI33_RS04030 (CWI33_04030) - 773262..773672 (+) 411 WP_000846713.1 hypothetical protein -
  CWI33_RS04040 (CWI33_04040) - 773893..774714 (+) 822 WP_001234530.1 DUF932 domain-containing protein -
  CWI33_RS04045 (CWI33_04045) - 774796..775275 (+) 480 WP_000860076.1 antirestriction protein -
  CWI33_RS04050 (CWI33_04050) radC 775291..775767 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  CWI33_RS04055 (CWI33_04055) yeeT 775830..776051 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  CWI33_RS04060 (CWI33_04060) cbeA 776125..776493 (+) 369 WP_100881898.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CWI33_RS04065 (CWI33_04065) cbtA 776582..776955 (+) 374 Protein_754 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CWI33_RS04070 (CWI33_04070) yeeW 776952..777146 (+) 195 WP_000988600.1 DUF5983 family protein -
  CWI33_RS24695 - 777192..777272 (+) 81 Protein_756 hypothetical protein -
  CWI33_RS04075 (CWI33_04075) - 777561..777707 (-) 147 Protein_757 transposase domain-containing protein -
  CWI33_RS04080 (CWI33_04080) - 777761..777943 (+) 183 WP_100882005.1 EutP/PduV family microcompartment system protein -
  CWI33_RS04085 (CWI33_04085) tmaR 778044..778373 (-) 330 WP_000450409.1 DUF496 family protein -
  CWI33_RS04090 (CWI33_04090) yeeA 778545..779603 (-) 1059 WP_072712380.1 FUSC family protein -
  CWI33_RS04095 (CWI33_04095) sbmC 779801..780274 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=216677 CWI33_RS04050 WP_001186773.1 775291..775767(+) (radC) [Escherichia coli strain SC516]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=216677 CWI33_RS04050 WP_001186773.1 775291..775767(+) (radC) [Escherichia coli strain SC516]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment