Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   CWI26_RS07425 Genome accession   NZ_CP025043
Coordinates   1498079..1500295 (-) Length   738 a.a.
NCBI ID   WP_100881498.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1493079..1505295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS07385 (CWI26_07385) - 1493197..1493991 (-) 795 WP_100881495.1 Nif3-like dinuclear metal center hexameric protein -
  CWI26_RS07390 (CWI26_07390) - 1493981..1494664 (-) 684 WP_100881496.1 tRNA (adenine(22)-N(1))-methyltransferase -
  CWI26_RS07395 (CWI26_07395) - 1494666..1495340 (-) 675 WP_100881497.1 DnaD domain-containing protein -
  CWI26_RS07400 (CWI26_07400) metA 1495350..1496291 (-) 942 WP_014637718.1 homoserine O-acetyltransferase MetA -
  CWI26_RS07405 (CWI26_07405) - 1496395..1496907 (-) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  CWI26_RS12225 - 1497179..1497838 (-) 660 Protein_1367 DUF3114 domain-containing protein -
  CWI26_RS07420 (CWI26_07420) - 1497789..1498052 (-) 264 WP_002941385.1 hypothetical protein -
  CWI26_RS07425 (CWI26_07425) recJ 1498079..1500295 (-) 2217 WP_100881498.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  CWI26_RS07430 (CWI26_07430) cls 1500452..1501999 (-) 1548 WP_100881499.1 cardiolipin synthase -
  CWI26_RS07435 (CWI26_07435) - 1502171..1504345 (-) 2175 WP_024378496.1 copper-translocating P-type ATPase -
  CWI26_RS07440 (CWI26_07440) - 1504489..1505244 (-) 756 WP_100881500.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 82471.18 Da        Isoelectric Point: 4.4836

>NTDB_id=216625 CWI26_RS07425 WP_100881498.1 1498079..1500295(-) (recJ) [Streptococcus suis strain AH681]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPDGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVETARTMGQNNAHLKVRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVE
GIQLYNIRGKQHNLPEGVPILDMADLSNLAGADSLVLANLPENLSDLKSVFQKHDFQAVYFKNEMATPYYLDGYGSREQF
AKLYKTIYQFKEFDVRYKLAELANYLKIKQPLLVKMIQIFQELGFVTITDGVMTVNADAEKREIADSQIYQDLKKLVIEQ
ELMALGTVQEIYDWLRKP

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=216625 CWI26_RS07425 WP_100881498.1 1498079..1500295(-) (recJ) [Streptococcus suis strain AH681]
GTGATAAAACCTAATTATGACTGGCAATTATTAACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTAGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGCATGACCTCGGCATCTATTCTGAAAGAAACTTTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAATCGTTTCACAGATGGTTATGGTCCCAATCAGTCGGTTTATAAGTATT
TTATCGAGCAACAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCCGATGGAAATTATCCCTTCAAACATTTGGCGGGCTGCGGCGTGGCTTTTAAATTGGCCTGTGCTCTTCTTG
AAACGGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGTACCATCGCTGATATGGTTAGCTTGACCGATGAAAATCGG
GTCATGGTCAAGTACGGTCTTTCTCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGACGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCTCTCATGATTGATAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCAGGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCAGCAACCTGTTATCG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCGGTTGAAGCAGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTAACCTTGACAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGACTTGGAAGAATTAACTCTTGATACGCTAAAGTCCTTCGAAAAATTAGCACCCTACGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAAACAGCAAGAACCATGGGACAAAACAATGCTCACCTGAAAGTACGAATTAC
AAAAGGTGCTGCAGGATTTGATGTCGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGCCTCCAACTCATGCTGGTTGACGCCCGTGTAGAA
GGTATCCAGCTTTACAATATCCGTGGCAAACAGCACAACCTTCCAGAAGGAGTGCCCATTTTGGATATGGCTGATTTGTC
TAATCTAGCAGGTGCTGATTCGCTTGTCTTAGCCAATTTACCCGAAAATCTATCGGACCTCAAATCCGTTTTCCAAAAAC
ATGATTTTCAAGCGGTTTATTTCAAGAATGAAATGGCGACTCCCTATTACTTAGACGGTTATGGTAGTCGGGAGCAATTT
GCCAAGCTCTATAAGACCATTTATCAGTTTAAGGAATTTGATGTCCGTTACAAATTGGCAGAATTGGCCAACTACTTGAA
AATCAAGCAGCCGCTCTTGGTCAAAATGATTCAAATTTTCCAAGAACTTGGCTTTGTGACCATTACAGACGGGGTCATGA
CGGTCAATGCGGATGCTGAAAAACGAGAAATTGCGGATAGTCAGATCTATCAAGACCTGAAAAAACTGGTCATAGAACAG
GAACTCATGGCTCTGGGGACAGTTCAGGAAATCTATGATTGGCTTCGCAAACCTTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-432)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(590-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.418

99.729

0.722
  recJ Bacillus subtilis subsp. subtilis str. 168

38.615

100

0.393