Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   BZJ79_RS04850 Genome accession   NZ_CP019592
Coordinates   973073..974059 (+) Length   328 a.a.
NCBI ID   WP_084578672.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD5     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 968073..979059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZJ79_RS04830 (BZJ79_04830) - 968441..970063 (+) 1623 WP_000406183.1 peptide ABC transporter substrate-binding protein -
  BZJ79_RS04835 (BZJ79_04835) trpS 970183..971172 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  BZJ79_RS04840 (BZJ79_04840) spxA 971467..971862 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  BZJ79_RS04845 (BZJ79_04845) mecA 972233..972952 (+) 720 WP_001217731.1 adaptor protein MecA -
  BZJ79_RS04850 (BZJ79_04850) coiA 973073..974059 (+) 987 WP_084578672.1 competence protein CoiA Machinery gene
  BZJ79_RS04855 (BZJ79_04855) pepF 974107..975915 (+) 1809 WP_000082727.1 oligoendopeptidase F -
  BZJ79_RS04860 (BZJ79_04860) yjbH 976375..977181 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  BZJ79_RS04865 (BZJ79_04865) - 977204..977569 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  BZJ79_RS04870 (BZJ79_04870) - 977673..978266 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  BZJ79_RS04875 (BZJ79_04875) - 978452..978799 (+) 348 WP_001242104.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38728.25 Da        Isoelectric Point: 9.5135

>NTDB_id=216602 BZJ79_RS04850 WP_084578672.1 973073..974059(+) (coiA) [Staphylococcus aureus strain GD5]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPISYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNVKMSGLFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGESILVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=216602 BZJ79_RS04850 WP_084578672.1 973073..974059(+) (coiA) [Staphylococcus aureus strain GD5]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTTCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGTCAAAATGAGTGGGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAGAAAGCATATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCGATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

95.732

100

0.957
  coiA Staphylococcus aureus MW2

95.732

100

0.957

Multiple sequence alignment