Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CWI26_RS00220 Genome accession   NZ_CP025043
Coordinates   29138..29920 (+) Length   260 a.a.
NCBI ID   WP_024375937.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24138..34920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS00195 (CWI26_00195) mreC 24148..24984 (+) 837 WP_024419582.1 rod shape-determining protein MreC -
  CWI26_RS00200 (CWI26_00200) mreD 24986..25489 (+) 504 WP_228377880.1 rod shape-determining protein MreD -
  CWI26_RS00205 (CWI26_00205) pcsB 25574..26815 (+) 1242 WP_024419580.1 peptidoglycan hydrolase PcsB -
  CWI26_RS00210 (CWI26_00210) - 26918..27886 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  CWI26_RS00215 (CWI26_00215) - 27973..29151 (+) 1179 WP_024375938.1 pyridoxal phosphate-dependent aminotransferase -
  CWI26_RS00220 (CWI26_00220) recO 29138..29920 (+) 783 WP_024375937.1 DNA repair protein RecO Machinery gene
  CWI26_RS00225 (CWI26_00225) plsX 29917..30924 (+) 1008 WP_100881012.1 phosphate acyltransferase PlsX -
  CWI26_RS00230 (CWI26_00230) - 30917..31165 (+) 249 WP_100881013.1 phosphopantetheine-binding protein -
  CWI26_RS00235 (CWI26_00235) purC 31283..31990 (+) 708 WP_100881014.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30514.04 Da        Isoelectric Point: 5.4193

>NTDB_id=216563 CWI26_RS00220 WP_024375937.1 29138..29920(+) (recO) [Streptococcus suis strain AH681]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKFRLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKA
INADIFKLSYATYILALADAALQDKVYDPALFSFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGVSLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=216563 CWI26_RS00220 WP_024375937.1 29138..29920(+) (recO) [Streptococcus suis strain AH681]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGATAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTTCAGGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTCAAAATCAATGATGATGGGCTGTCTTATATTGAGGATTTTCATCAAGTCCAGCCTTTTAAGGCG
ATCAATGCTGATATTTTCAAACTCAGCTATGCGACCTATATCTTGGCCTTGGCAGATGCGGCCTTGCAGGATAAGGTTTA
TGATCCAGCTCTCTTTTCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCGGGTTTGGATTATGAAGTCTTGACCAATA
TCTTTGAAATTCAGCTCTTGGGACGTTTTGGGGTCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGTCTG
CCTTTTGATTATTCTTACAAGTATAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATTTGGA
CCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTAGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGTTGTACGAGGAATATGTGGGGATTCACTTGAAATCAAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.127

96.538

0.658