Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NMA_RS07025 Genome accession   NC_003116
Coordinates   1300324..1302069 (-) Length   581 a.a.
NCBI ID   WP_002246209.1    Uniprot ID   A0A0U1RJ09
Organism   Neisseria meningitidis Z2491     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1295324..1307069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS07005 (NMA1396) - 1295492..1295926 (+) 435 WP_002223758.1 hypothetical protein -
  NMA_RS07010 (NMA1397) - 1295985..1296254 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  NMA_RS07015 (NMA1398) lon 1296436..1298898 (-) 2463 WP_002246208.1 endopeptidase La -
  NMA_RS12565 - 1298998..1299174 (+) 177 WP_226893060.1 nitric oxide synthase -
  NMA_RS07020 (NMA1400) - 1299149..1300252 (+) 1104 WP_002235817.1 methyltransferase -
  NMA_RS07025 (NMA1401) recD 1300324..1302069 (-) 1746 WP_002246209.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMA_RS07030 (NMA1402) lolD 1302137..1302832 (-) 696 WP_002246210.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMA_RS07035 (NMA1403) - 1302825..1304072 (-) 1248 WP_002237004.1 lipoprotein-releasing ABC transporter permease subunit -
  NMA_RS07040 (NMA1405) - 1304278..1304556 (+) 279 WP_002213502.1 hypothetical protein -
  NMA_RS07045 (NMA1406) recR 1304612..1305229 (-) 618 WP_002237005.1 recombination mediator RecR -
  NMA_RS07050 (NMA1407) - 1305296..1306834 (-) 1539 WP_002237006.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62991.69 Da        Isoelectric Point: 6.1283

>NTDB_id=21650 NMA_RS07025 WP_002246209.1 1300324..1302069(-) (recD) [Neisseria meningitidis Z2491]
MERQTDEFAQAAARAAIRFLEHYASSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGKDENLPNIALAAPTGKAAAHMARALHRAINGFDALEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCRHVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQG

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=21650 NMA_RS07025 WP_002246209.1 1300324..1302069(-) (recD) [Neisseria meningitidis Z2491]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACACTATGCGAGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTTGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTAAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCTGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATAGGGGCGGTGCTGTCCGTTTTGTCACAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCACCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCACACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCGGGCATT
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCCGCCATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCATATTTTGCCGGAGAGCCGATTATGATCAGGCAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U1RJ09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95

99.828

0.948

Multiple sequence alignment