Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NMA_RS05555 Genome accession   NC_003116
Coordinates   1057056..1057649 (+) Length   197 a.a.
NCBI ID   WP_010981162.1    Uniprot ID   A0A0U1RIH1
Organism   Neisseria meningitidis Z2491     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1052056..1062649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS05530 (NMA1104) - 1052308..1052895 (-) 588 WP_002246908.1 superoxide dismutase -
  NMA_RS05535 (NMA1105) dnaB 1053058..1054464 (+) 1407 WP_002238995.1 replicative DNA helicase -
  NMA_RS05540 (NMA1106) pilH 1054773..1055438 (+) 666 WP_010981159.1 GspH/FimT family pseudopilin Machinery gene
  NMA_RS05545 (NMA1107) pilV 1055468..1056082 (+) 615 WP_010981160.1 type IV pilus modification protein PilV Machinery gene
  NMA_RS05550 (NMA1108) pilJ 1056079..1057077 (+) 999 WP_010981161.1 PilW family protein Machinery gene
  NMA_RS05555 (NMA1109) pilK 1057056..1057649 (+) 594 WP_010981162.1 pilus assembly PilX family protein Machinery gene
  NMA_RS05560 (NMA1110) pilX 1057654..1058127 (+) 474 WP_002245541.1 PilX family type IV pilin Machinery gene
  NMA_RS05565 (NMA1111) - 1059491..1059919 (-) 429 Protein_1052 AzlC family ABC transporter permease -
  NMA_RS05570 (NMA1112) dut 1060062..1060514 (+) 453 WP_002226436.1 dUTP diphosphatase -
  NMA_RS05575 (NMA1113) dapC 1060590..1061777 (+) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  NMA_RS15065 - 1061865..1061990 (+) 126 Protein_1055 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21647.57 Da        Isoelectric Point: 6.3842

>NTDB_id=21648 NMA_RS05555 WP_010981162.1 1057056..1057649(+) (pilK) [Neisseria meningitidis Z2491]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCTAKSTGLCIDNKGMEYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=21648 NMA_RS05555 WP_010981162.1 1057056..1057649(+) (pilK) [Neisseria meningitidis Z2491]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAAATCTACAG
GCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U1RIH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.624

100

0.898

Multiple sequence alignment