Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SA_RS08270 Genome accession   NC_002745
Coordinates   1677328..1677930 (-) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus subsp. aureus N315     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1672328..1682930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA_RS08250 (SA1464) yajC 1673824..1674084 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SA_RS08255 (SA1465) tgt 1674103..1675242 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SA_RS08260 (SA1466) queA 1675265..1676290 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SA_RS08265 (SA1467) ruvB 1676292..1677296 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SA_RS08270 (SA1468) ruvA 1677328..1677930 (-) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  SA_RS08275 (SA1469) - 1677944..1678399 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SA_RS08280 (SA1470) obgE 1678412..1679704 (-) 1293 WP_000496100.1 GTPase ObgE -
  SA_RS08285 (SA1471) rpmA 1680058..1680342 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SA_RS08290 (SA1472) - 1680354..1680674 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SA_RS08295 (SA1473) rplU 1680680..1680988 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SA_RS08300 (SA1474) mreD 1681224..1681754 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  SA_RS08305 (SA1475) mreC 1681754..1682596 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  SA_RS08310 - 1682795..1682914 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=21644 SA_RS08270 WP_000271550.1 1677328..1677930(-) (ruvA) [Staphylococcus aureus subsp. aureus N315]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=21644 SA_RS08270 WP_000271550.1 1677328..1677930(-) (ruvA) [Staphylococcus aureus subsp. aureus N315]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43

Multiple sequence alignment