Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BVH56_RS08045 Genome accession   NZ_CP019573
Coordinates   1570212..1571594 (-) Length   460 a.a.
NCBI ID   WP_077140945.1    Uniprot ID   -
Organism   Abyssicoccus albus strain S31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1565212..1576594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH56_RS08020 (BVH56_08020) cysE 1565553..1566200 (-) 648 WP_077140940.1 serine O-acetyltransferase -
  BVH56_RS08025 (BVH56_08025) gltX 1566450..1567901 (-) 1452 WP_077140941.1 glutamate--tRNA ligase -
  BVH56_RS08030 (BVH56_08030) ispF 1567933..1568403 (-) 471 WP_077140942.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BVH56_RS08035 (BVH56_08035) ispD 1568403..1569092 (-) 690 WP_077140943.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BVH56_RS08040 (BVH56_08040) - 1569102..1570151 (-) 1050 WP_077140944.1 PIN/TRAM domain-containing protein -
  BVH56_RS08045 (BVH56_08045) radA 1570212..1571594 (-) 1383 WP_077140945.1 DNA repair protein RadA Machinery gene
  BVH56_RS08050 (BVH56_08050) modA 1571791..1572588 (+) 798 WP_077140946.1 molybdate ABC transporter substrate-binding protein -
  BVH56_RS08055 (BVH56_08055) modB 1572592..1573248 (+) 657 WP_077140947.1 molybdate ABC transporter permease subunit -
  BVH56_RS08060 (BVH56_08060) moaA 1573260..1574279 (-) 1020 WP_077140948.1 GTP 3',8-cyclase MoaA -
  BVH56_RS08065 (BVH56_08065) - 1574260..1574910 (-) 651 WP_077140949.1 molybdenum cofactor guanylyltransferase -
  BVH56_RS08070 (BVH56_08070) - 1574915..1575166 (-) 252 WP_077140950.1 MoaD/ThiS family protein -
  BVH56_RS08075 (BVH56_08075) - 1575163..1575597 (-) 435 WP_225971406.1 molybdenum cofactor biosynthesis protein MoaE -
  BVH56_RS08080 (BVH56_08080) mobB 1575584..1576063 (-) 480 WP_077140951.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 51185.82 Da        Isoelectric Point: 7.2097

>NTDB_id=216422 BVH56_RS08045 WP_077140945.1 1570212..1571594(-) (radA) [Abyssicoccus albus strain S31]
MAKKKTIYECMACGATSPKWMGRCSHCGAWNQIEEVTQFQEATKAKAKVSQYRNQSDSSEVLKLSEVTKEDVSRKSSRIK
EFDRVLGGGIVDGSLVLIGGDPGIGKSTLLLQASAKLSQQYKVLYISGEESVRQTKLRADRLTEDASELYVHSETNLDVI
HDMVKKHKPDFLIVDSIQTVHHPEVESAPGSVSQVRECTHALMTIAKTEGIATFIVGHVTKEGQIAGPRMLEHMVDTVLY
FEGDTHHSYRILRAVKNRFGSTHEMGIFEMKQSGLTEVINPSQMFLEERGEHVEGSTVVATMEGTRPLLVEVQALISPTT
FHNPRRMATGIDYNRLNLLMAVLEKKQGLLMQQQDAYLKVAGGVKLDEPAVDLSIIIAIASSFKSKATKPHDCYVGEVGL
TGEVRRVARIEQRIQEALKLGFKRIIIPKHNMNEIERFGEIEVLPVQNISEALKIAFESQ

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=216422 BVH56_RS08045 WP_077140945.1 1570212..1571594(-) (radA) [Abyssicoccus albus strain S31]
ATGGCCAAAAAGAAAACAATCTATGAATGTATGGCATGTGGCGCTACAAGTCCTAAGTGGATGGGAAGATGTTCACATTG
TGGCGCTTGGAATCAAATCGAAGAGGTAACACAGTTTCAAGAAGCAACCAAAGCAAAGGCTAAAGTAAGTCAGTATCGTA
ATCAATCAGATTCAAGTGAAGTGTTGAAACTGAGTGAGGTGACGAAAGAAGATGTTTCTAGGAAATCAAGTCGAATCAAA
GAGTTTGACCGAGTGCTTGGTGGTGGAATTGTCGATGGTTCGCTTGTTCTCATTGGTGGTGACCCTGGAATCGGGAAGTC
GACGTTGTTGCTACAAGCGAGTGCAAAGCTTAGCCAGCAGTATAAAGTGTTATATATATCAGGAGAAGAGAGCGTACGAC
AGACAAAACTCCGAGCTGATCGTTTAACTGAAGATGCAAGTGAACTGTACGTTCATTCAGAGACAAATTTAGATGTCATA
CACGACATGGTGAAAAAACATAAACCGGACTTCTTAATTGTCGATTCCATCCAAACCGTTCATCATCCAGAAGTGGAAAG
TGCGCCTGGAAGTGTGAGTCAAGTGCGGGAATGTACGCATGCATTGATGACCATTGCTAAAACTGAAGGTATTGCAACAT
TTATTGTTGGACACGTGACGAAAGAAGGGCAAATTGCAGGGCCTAGAATGTTAGAGCATATGGTTGATACAGTACTTTAT
TTTGAAGGTGATACACATCATAGTTATCGTATATTACGTGCAGTCAAAAACAGATTCGGTTCGACACATGAGATGGGCAT
ATTTGAGATGAAACAATCAGGTTTAACCGAAGTCATAAATCCAAGTCAAATGTTTTTAGAAGAGCGCGGTGAACATGTAG
AAGGGTCAACCGTTGTAGCAACAATGGAAGGCACAAGACCGTTGCTTGTTGAAGTACAAGCGTTAATATCTCCTACAACG
TTCCATAACCCTCGACGTATGGCGACCGGTATAGATTACAATCGGTTGAACTTGTTAATGGCTGTACTCGAAAAGAAACA
AGGGTTGTTAATGCAACAACAAGATGCTTACTTAAAGGTTGCAGGTGGTGTGAAATTAGATGAGCCAGCAGTTGATTTAA
GTATCATTATTGCCATTGCATCAAGCTTCAAGTCCAAAGCAACGAAGCCGCATGATTGCTACGTCGGTGAAGTTGGACTA
ACTGGTGAAGTAAGGCGTGTAGCAAGGATCGAACAACGTATTCAGGAAGCATTGAAATTAGGGTTTAAACGAATCATCAT
TCCGAAGCACAATATGAATGAAATAGAACGCTTTGGTGAGATTGAGGTGTTACCTGTTCAAAACATCTCTGAAGCATTGA
AAATTGCGTTTGAGTCCCAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(353-457)

AAA domain (AAA_25)

(68-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

62.745

99.783

0.626
  radA Streptococcus mitis NCTC 12261

59.737

99.348

0.593
  radA Streptococcus pneumoniae Rx1

59.737

99.348

0.593
  radA Streptococcus pneumoniae D39

59.737

99.348

0.593
  radA Streptococcus pneumoniae R6

59.737

99.348

0.593
  radA Streptococcus pneumoniae TIGR4

59.737

99.348

0.593
  radA Streptococcus mitis SK321

59.737

99.348

0.593

Multiple sequence alignment