Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BVH56_RS07230 Genome accession   NZ_CP019573
Coordinates   1411932..1412897 (-) Length   321 a.a.
NCBI ID   WP_077140800.1    Uniprot ID   -
Organism   Abyssicoccus albus strain S31     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1410152..1424705 1411932..1412897 within 0


Gene organization within MGE regions


Location: 1410152..1424705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH56_RS07220 (BVH56_07220) - 1410152..1410976 (-) 825 WP_077140799.1 ABC transporter ATP-binding protein -
  BVH56_RS07225 (BVH56_07225) - 1410977..1411945 (-) 969 WP_225971363.1 iron chelate uptake ABC transporter family permease subunit -
  BVH56_RS07230 (BVH56_07230) ceuB 1411932..1412897 (-) 966 WP_077140800.1 ABC transporter permease Machinery gene
  BVH56_RS07235 (BVH56_07235) - 1413023..1413667 (-) 645 WP_077140801.1 hypothetical protein -
  BVH56_RS07240 (BVH56_07240) - 1413725..1414138 (-) 414 WP_077140802.1 FixH family protein -
  BVH56_RS07245 (BVH56_07245) queF 1414272..1414766 (+) 495 WP_077140803.1 preQ(1) synthase -
  BVH56_RS07250 (BVH56_07250) queC 1414860..1415516 (+) 657 WP_077140804.1 7-cyano-7-deazaguanine synthase QueC -
  BVH56_RS07255 (BVH56_07255) - 1415516..1415929 (+) 414 WP_077140805.1 6-carboxytetrahydropterin synthase -
  BVH56_RS07260 (BVH56_07260) queE 1415926..1416636 (+) 711 WP_077140806.1 7-carboxy-7-deazaguanine synthase QueE -
  BVH56_RS07265 (BVH56_07265) - 1416849..1417736 (-) 888 WP_077140807.1 nuclease-related domain-containing protein -
  BVH56_RS07270 (BVH56_07270) nrdF 1417812..1418774 (-) 963 WP_077140808.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  BVH56_RS07275 (BVH56_07275) nrdE 1418801..1420906 (-) 2106 WP_077140809.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  BVH56_RS07280 (BVH56_07280) nrdI 1420903..1421274 (-) 372 WP_077140810.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  BVH56_RS07285 (BVH56_07285) - 1421574..1422440 (+) 867 WP_077140811.1 DMT family transporter -
  BVH56_RS07290 (BVH56_07290) - 1422592..1424100 (+) 1509 WP_077140812.1 peptide MFS transporter -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34565.74 Da        Isoelectric Point: 9.6407

>NTDB_id=216421 BVH56_RS07230 WP_077140800.1 1411932..1412897(-) (ceuB) [Abyssicoccus albus strain S31]
MSKSIAILSITLLVLSIISIFVGVVSLNPNDILSLDDNQLNVLLSSRLPRTLSIIIAGMSLSLCGLIMQQLTQNKFVAPT
TAGTMDFAKLGIIISLMFFPEANLLLKLLFATVLALLGTSVFIQIIQKVKFKDIVFVPLIGIMLGNVISSLGTYIALKSN
SIQSIGSWFQGDFSIVTSGRYEILFITIPLLIIAGLYANQFTIAGMGESFSVNLGLNYQRIVQIGLLITSIITAVVVVTV
GMLPFLGLIVPNIVSLYRGDSIRNTLVHVSLTGAILVMICDIIGRIIIFPYEIAIGLVIGVVGSVVFLIMILRSRKGFGE
A

Nucleotide


Download         Length: 966 bp        

>NTDB_id=216421 BVH56_RS07230 WP_077140800.1 1411932..1412897(-) (ceuB) [Abyssicoccus albus strain S31]
ATGTCTAAATCAATTGCCATTTTGAGTATTACTTTGCTTGTATTATCAATTATATCTATATTTGTTGGTGTTGTAAGTTT
AAACCCAAATGATATTTTGTCGCTAGATGACAATCAATTAAATGTTTTATTATCCAGTCGATTGCCAAGAACATTAAGCA
TTATCATTGCGGGAATGAGCTTGAGTTTATGTGGATTAATCATGCAACAATTAACCCAAAATAAATTCGTTGCACCGACA
ACTGCTGGTACAATGGACTTTGCGAAATTAGGTATTATTATTTCTTTGATGTTTTTCCCAGAAGCCAATTTACTGTTGAA
GTTGCTGTTTGCAACTGTGCTTGCATTGCTTGGAACATCTGTATTTATTCAAATAATCCAAAAAGTAAAATTTAAAGATA
TCGTATTTGTCCCACTTATCGGCATTATGTTAGGGAATGTGATTAGTTCATTAGGGACTTATATCGCTTTGAAATCCAAT
AGTATTCAATCCATCGGAAGTTGGTTTCAAGGGGACTTTAGTATTGTAACATCAGGAAGATACGAGATTCTCTTTATTAC
AATCCCTTTGCTTATTATTGCGGGACTATATGCTAATCAATTTACGATTGCTGGTATGGGAGAATCATTCAGTGTAAATT
TAGGGTTAAATTATCAGCGAATTGTTCAAATTGGACTGTTGATCACCTCGATTATTACAGCAGTAGTCGTTGTCACGGTA
GGGATGTTACCATTTCTAGGTTTGATTGTTCCGAATATCGTCTCGTTATACCGAGGTGATTCAATTCGTAATACTTTGGT
TCATGTATCATTGACTGGTGCAATATTAGTGATGATTTGTGATATTATTGGACGAATTATAATCTTCCCATATGAGATTG
CAATTGGTCTTGTGATTGGAGTCGTTGGTAGTGTCGTATTTTTAATTATGATTTTAAGGAGTCGAAAAGGTTTTGGCGAA
GCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(12-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.316

98.442

0.495

Multiple sequence alignment