Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   BZP34_RS08135 Genome accession   NZ_CP019563
Coordinates   1531886..1532455 (-) Length   189 a.a.
NCBI ID   WP_000872881.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SR434     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1526886..1537455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZP34_RS08095 (BZP34_08095) - 1527360..1527968 (-) 609 WP_000020306.1 class I SAM-dependent methyltransferase -
  BZP34_RS08100 (BZP34_08100) rplL 1528143..1528511 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  BZP34_RS08105 (BZP34_08105) rplJ 1528554..1529054 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  BZP34_RS08110 (BZP34_08110) rplA 1529326..1530018 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  BZP34_RS08115 (BZP34_08115) rplK 1530226..1530648 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  BZP34_RS08120 (BZP34_08120) nusG 1530829..1531377 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  BZP34_RS08125 (BZP34_08125) secE 1531390..1531572 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  BZP34_RS08130 (BZP34_08130) rpmG 1531628..1531771 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  BZP34_RS08135 (BZP34_08135) sigH 1531886..1532455 (-) 570 WP_000872881.1 sigma-70 family RNA polymerase sigma factor Regulator
  BZP34_RS08140 (BZP34_08140) - 1532536..1533060 (-) 525 WP_000664732.1 NYN domain-containing protein -
  BZP34_RS08145 (BZP34_08145) rlmB 1533060..1533806 (-) 747 WP_000390329.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BZP34_RS08150 (BZP34_08150) - 1533814..1534218 (-) 405 WP_000370185.1 Mini-ribonuclease 3 -
  BZP34_RS08155 (BZP34_08155) cysS 1534211..1535611 (-) 1401 WP_000631966.1 cysteine--tRNA ligase -
  BZP34_RS08160 (BZP34_08160) cysE 1535595..1536242 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23096.97 Da        Isoelectric Point: 9.6924

>NTDB_id=216387 BZP34_RS08135 WP_000872881.1 1531886..1532455(-) (sigH) [Staphylococcus aureus strain SR434]
MKYDLTTQDSTIKRNNAINDKDFEKLVMNLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=216387 BZP34_RS08135 WP_000872881.1 1531886..1532455(-) (sigH) [Staphylococcus aureus strain SR434]
TTGAAATATGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGAATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTTATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment