Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BWR56_RS09700 Genome accession   NZ_CP019562
Coordinates   1942819..1944183 (-) Length   454 a.a.
NCBI ID   WP_180367621.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1937819..1949183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS09675 (BWR56_1913) - 1938152..1939321 (-) 1170 WP_076984872.1 pyridoxal phosphate-dependent aminotransferase -
  BWR56_RS09680 (BWR56_1914) - 1939473..1940483 (+) 1011 WP_076984873.1 YeiH family protein -
  BWR56_RS09685 (BWR56_1915) - 1940512..1940949 (-) 438 WP_076984874.1 CoA-binding protein -
  BWR56_RS09690 (BWR56_1916) - 1941069..1942037 (-) 969 WP_076984875.1 ribose-phosphate diphosphokinase -
  BWR56_RS09695 (BWR56_1917) - 1942252..1942746 (-) 495 WP_002876632.1 beta-class carbonic anhydrase -
  BWR56_RS09700 (BWR56_1918) radA 1942819..1944183 (-) 1365 WP_180367621.1 DNA repair protein RadA Machinery gene
  BWR56_RS09705 (BWR56_1919) - 1944223..1944711 (-) 489 WP_049506296.1 hypothetical protein -
  BWR56_RS09710 (BWR56_1920) - 1944733..1945248 (-) 516 WP_049506298.1 histidine phosphatase family protein -
  BWR56_RS09715 (BWR56_1921) - 1945250..1945693 (-) 444 WP_000701979.1 dUTP diphosphatase -
  BWR56_RS09725 (BWR56_1922) tadA 1945879..1946346 (-) 468 WP_049506373.1 tRNA adenosine(34) deaminase TadA -
  BWR56_RS09730 (BWR56_1923) - 1946545..1947831 (-) 1287 WP_049506397.1 adenylosuccinate synthase -
  BWR56_RS10035 comW 1948073..1948309 (-) 237 WP_049506375.1 sigma(X)-activator ComW -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49559.10 Da        Isoelectric Point: 6.1894

>NTDB_id=216356 BWR56_RS09700 WP_180367621.1 1942819..1944183(-) (radA) [Streptococcus oralis strain S.MIT/ORALIS-351]
MIAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEV
ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEI
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGIIPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=216356 BWR56_RS09700 WP_180367621.1 1942819..1944183(-) (radA) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATCATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCAAAATATCTAGGGCGTTGTCCTAA
CTGTGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGA
AAACCAAGCCCATGAAACTGGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGT
GTACTTGGAGGCGGAGTGGTACCAGGGAGTCTCGTCCTTATCGGTGGGGATCCAGGGATTGGGAAATCAACCCTTCTCTT
ACAAGTATCGACTCAGCTGTCCCAAGTAGGGACTGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTCC
GTGCAGAGCGCTTGGGGGATATTGATAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGATCTGAGGTG
GAGCGCATCCAACCAGATTTTCTCATCATCGACTCTATCCAGACGATTATGTCTCCTGAAATTTCAGGGGTGCAAGGATC
TGTGTCTCAGGTGCGTGAGGTGACAGCTGAACTCATGCAGTTGGCGAAGACCAATAACATTGCCATCTTTATCGTAGGGC
ATGTGACCAAGGAAGGTACCTTGGCTGGTCCGCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAG
CGCCACCATACCTTCCGTATTTTGAGGGCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATTGGCATCTTTGAGATGCA
GTCGGGTGGATTGGTTGAGGTCCTCAATCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGGGCTACTGGCTCGTCAA
TCGTTGTGACCATGGAAGGGACCCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCAACCATGTTTGGAAATGCT
AAGCGTACGACGACTGGACTTGATTTCAATCGTGCAAGTCTGATTATGGCTGTTTTGGAAAAACGAGCAGGGCTTCTCTT
GCAAAACCAGGATGCCTATCTCAAATCTGCTGGTGGTGTGAAATTGGATGAGCCTGCCATTGACTTAGCCGTTGCAGTGG
CCATTGCCTCTAGTTACAAGGACAAGCCTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATT
CGGCGCGTGAATCGCATCGAACAACGTATTAATGAAGCGGCAAAACTGGGCTTTACCAAGATTTATGTACCCAAGAATTC
CTTGACAGGAATCATTCCACCCAAGGAAATTGAAGTCATTGGTGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTG
CATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

99.117

99.78

0.989
  radA Streptococcus mitis SK321

98.896

99.78

0.987
  radA Streptococcus pneumoniae Rx1

98.896

99.78

0.987
  radA Streptococcus pneumoniae D39

98.896

99.78

0.987
  radA Streptococcus pneumoniae R6

98.896

99.78

0.987
  radA Streptococcus pneumoniae TIGR4

98.896

99.78

0.987
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

99.78

0.63

Multiple sequence alignment