Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BZY74_RS16640 Genome accession   NZ_CP019558
Coordinates   3276634..3277263 (+) Length   209 a.a.
NCBI ID   WP_032296620.1    Uniprot ID   -
Organism   Escherichia coli strain KSC207     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3271634..3282263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZY74_RS16615 (BZY74_16830) ycbZ 3272035..3273795 (-) 1761 WP_000156526.1 AAA family ATPase -
  BZY74_RS16620 (BZY74_16835) matP 3273981..3274433 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BZY74_RS16625 (BZY74_16840) ompA 3274509..3275549 (-) 1041 WP_000750416.1 porin OmpA -
  BZY74_RS16635 (BZY74_16850) sulA 3275906..3276415 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BZY74_RS16640 (BZY74_16855) sxy/tfoX 3276634..3277263 (+) 630 WP_032296620.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BZY74_RS16645 (BZY74_16860) yccS 3277226..3279388 (-) 2163 WP_072170306.1 YccS family putative transporter -
  BZY74_RS16650 (BZY74_16865) yccF 3279398..3279844 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BZY74_RS16655 (BZY74_16870) helD 3279967..3282021 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24127.97 Da        Isoelectric Point: 8.9891

>NTDB_id=216259 BZY74_RS16640 WP_032296620.1 3276634..3277263(+) (sxy/tfoX) [Escherichia coli strain KSC207]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVAHRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=216259 BZY74_RS16640 WP_032296620.1 3276634..3277263(+) (sxy/tfoX) [Escherichia coli strain KSC207]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACA
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment