Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BZG42_RS09150 Genome accession   NZ_CP019557
Coordinates   1918460..1919824 (-) Length   454 a.a.
NCBI ID   WP_155996151.1    Uniprot ID   -
Organism   Streptococcus sp. DAT741     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1913460..1924824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG42_RS09125 (BZG42_09210) gltX 1913853..1915307 (-) 1455 WP_155996148.1 glutamate--tRNA ligase -
  BZG42_RS09130 (BZG42_09215) - 1915463..1916152 (-) 690 WP_120172330.1 hypothetical protein -
  BZG42_RS09135 (BZG42_09220) - 1916158..1916604 (-) 447 WP_120172332.1 LytTR family DNA-binding domain-containing protein -
  BZG42_RS09140 (BZG42_09225) - 1917011..1917730 (-) 720 WP_024532696.1 TIGR00266 family protein -
  BZG42_RS09145 (BZG42_09230) - 1917841..1918335 (-) 495 WP_024532695.1 carbonic anhydrase -
  BZG42_RS09150 (BZG42_09235) radA 1918460..1919824 (-) 1365 WP_155996151.1 DNA repair protein RadA Machinery gene
  BZG42_RS09155 (BZG42_09245) - 1920348..1920791 (-) 444 WP_024532693.1 dUTP diphosphatase -
  BZG42_RS09160 (BZG42_09250) - 1921229..1922083 (-) 855 WP_155996154.1 helix-turn-helix transcriptional regulator -
  BZG42_RS10155 - 1922424..1923044 (+) 621 WP_227985514.1 hypothetical protein -
  BZG42_RS09170 (BZG42_09260) - 1923413..1923706 (+) 294 WP_120172339.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49748.29 Da        Isoelectric Point: 6.8567

>NTDB_id=216237 BZG42_RS09150 WP_155996151.1 1918460..1919824(-) (radA) [Streptococcus sp. DAT741]
MIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVAVTEVKNERVSLTGEKTRPMKLNEVSSIQVSRTKTSMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRKEI
EKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGE
RQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGEI
RRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEIMAIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=216237 BZG42_RS09150 WP_155996151.1 1918460..1919824(-) (radA) [Streptococcus sp. DAT741]
ATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAGTCCTGCGAATACCACTCGCCCAAATACCTAGGGCGCTGTCCCAA
CTGTGGTTCTTGGTCGTCCTTTGTAGAGGAAGTGGCAGTTACAGAAGTTAAGAATGAGCGAGTCAGTTTGACAGGCGAGA
AGACCCGACCAATGAAGCTAAATGAAGTTTCCTCTATCCAAGTGTCTCGCACCAAGACTAGTATGGAAGAGTTCAATCGC
GTTCTGGGAGGAGGTGTAGTGCCAGGGAGTTTGGTTCTTATTGGTGGAGATCCGGGTATAGGCAAGTCCACCTTGCTCTT
GCAGGTTTCAACTCAGCTATCAACTATTGGTACTGTTCTTTATGTATCAGGAGAAGAGTCTGCCCAACAAATCAAGCTAC
GAGCAGAGCGCTTAGGCGATATTGACAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTATCCGCAAGGAGATT
GAAAAAATCAAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATTATGAGTCCGGATATTTCTAGCGTGCAGGGATC
AGTCAGTCAGGTGCGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAATAATATCGCAACCTTTATTGTCGGTC
ACATGACCAAGGAAGGAACTCTTGCAGGACCGCGTACTCTAGAACACATGGTAGATACGGTGCTTTATTTTGAGGGAGAG
CGCCAGCATACCTTCCGCATCTTGCGAGCGGTCAAAAATCGTTTTGGATCAACCAATGAGATCGGAATTTTTGAAATGCA
GTCTCAGGGTTTGGTAGAGGTTCTCAATCCTAGCGAAGTCTTTTTGGAAGAACGTTTGGATGGAGCGACAGGTTCTGCCA
TTGTTGTTACCATGGAGGGAACCAGACCTATCTTAGCAGAAGTACAAGCCTTGGTGACTCCGACCATGTTTGGTAATGCC
AAGCGGACGACAACAGGACTAGACTTCAATCGGGCGAGCTTAATTATGGCAGTTTTGGAAAAAAGGGCAGGTCTACTTTT
ACAAAATCAAGATGCTTACCTAAAATCAGCAGGTGGTGTCAAGTTAGATGAGCCGGCAATTGATCTTGCGGTAGCAGTTG
CCCTCGCTTCCAGCTACAAGGATAAGCCCACCAATCCTCAGGAGTGTTTTATCGGGGAAATCGGTCTGACAGGTGAAATA
CGCCGTGTCAATCGGATCGAACAGCGCATCAATGAAGCGGCTAAGTTGGGATTTACAAAAGTCTATGCTCCCAAAAATTC
CTTGACAGGTATCAAGGTCCCTAAAGAAATTATGGCTATAGGAGTGACAACAATTGGTGAAGTTTTGCAAAAAGTATTTA
ATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(63-219)

Subunit ChlI of Mg-chelatase (ChlI)

(362-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

90.487

99.559

0.901
  radA Streptococcus pneumoniae D39

90.487

99.559

0.901
  radA Streptococcus pneumoniae R6

90.487

99.559

0.901
  radA Streptococcus pneumoniae TIGR4

90.487

99.559

0.901
  radA Streptococcus mitis NCTC 12261

90.487

99.559

0.901
  radA Streptococcus mitis SK321

90.265

99.559

0.899
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.78

0.626

Multiple sequence alignment