Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   BZG42_RS03645 Genome accession   NZ_CP019557
Coordinates   752547..753389 (+) Length   280 a.a.
NCBI ID   WP_155970840.1    Uniprot ID   -
Organism   Streptococcus sp. DAT741     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 747547..758389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG42_RS03615 (BZG42_03635) - 747755..748633 (+) 879 WP_024532405.1 F0F1 ATP synthase subunit gamma -
  BZG42_RS03620 (BZG42_03640) atpD 748805..750211 (+) 1407 WP_024532406.1 F0F1 ATP synthase subunit beta -
  BZG42_RS03625 (BZG42_03645) - 750221..750637 (+) 417 WP_155970839.1 F0F1 ATP synthase subunit epsilon -
  BZG42_RS03630 (BZG42_03650) - 750801..751028 (+) 228 WP_032537890.1 DUF1146 family protein -
  BZG42_RS03635 (BZG42_03655) murA 751050..752333 (+) 1284 WP_155969961.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BZG42_RS03640 (BZG42_03660) - 752326..752517 (+) 192 WP_120171528.1 DNA-directed RNA polymerase subunit beta -
  BZG42_RS03645 (BZG42_03665) endA 752547..753389 (+) 843 WP_155970840.1 DNA/RNA non-specific endonuclease Machinery gene
  BZG42_RS03650 (BZG42_03670) - 753578..755131 (+) 1554 WP_120171530.1 MFS transporter -
  BZG42_RS03655 (BZG42_03675) - 755385..756413 (+) 1029 WP_155995647.1 sugar kinase -
  BZG42_RS03660 (BZG42_03680) uidA 756429..758219 (+) 1791 WP_155995645.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 30396.05 Da        Isoelectric Point: 9.9448

>NTDB_id=216220 BZG42_RS03645 WP_155970840.1 752547..753389(+) (endA) [Streptococcus sp. DAT741]
MAKKNVKKQAMSLFSLLATLIVVGGGYFLSSTTNSNVTNHPYYVNQSKASESVPSQELASSVLTENVKKQLGTKIEWNGA
GAFFINGNKTNLDASVASAPYGENKTKIVQGKMVPTVANALLAKSTRQYKDRDETGKGRTSWTPAGWHQIHGLSGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQASTGQNYFESQIRRALDKNKRVRYRVTLIYAEDNDLIPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYRTGKITVNPH

Nucleotide


Download         Length: 843 bp        

>NTDB_id=216220 BZG42_RS03645 WP_155970840.1 752547..753389(+) (endA) [Streptococcus sp. DAT741]
GTGGCAAAGAAAAATGTAAAAAAACAAGCCATGAGTTTGTTTAGTTTGTTGGCCACACTCATTGTAGTGGGTGGAGGCTA
CTTTCTAAGCAGTACGACGAATAGTAATGTTACGAATCATCCTTACTACGTCAATCAATCCAAAGCTAGTGAATCAGTAC
CAAGTCAAGAATTGGCTAGCTCAGTATTGACAGAAAATGTAAAAAAGCAACTCGGAACTAAGATTGAGTGGAACGGAGCA
GGTGCTTTCTTCATCAATGGGAATAAAACCAATCTAGATGCATCGGTAGCTAGTGCTCCTTATGGAGAAAATAAAACCAA
GATTGTACAGGGAAAAATGGTACCGACGGTTGCAAATGCTCTTTTAGCAAAATCAACCCGTCAGTACAAGGACCGAGATG
AAACAGGAAAGGGGCGTACCTCTTGGACTCCTGCTGGCTGGCATCAGATCCATGGCTTATCAGGGGAATATGATCATGCA
GTTGATCGAGGCCATTTACTAGGCTATGCCTTGATTGGTGGGCTTTCTGGTTTTGATGCTTCAACAAGCAATCCTAAGAA
CATAGCTGTTCAGACAGCTTGGTCCAATCAAGCCAATGACCAAGCTTCTACCGGGCAAAATTATTTTGAAAGTCAGATTC
GTCGGGCGTTGGATAAAAATAAGCGTGTCCGCTACCGTGTGACACTGATTTATGCAGAGGACAATGACTTGATTCCAGTT
GGGAGTCATTTAGAAGCAAAAGCAGCAGATGGAAGTCTAGAATTTAATGTTTTTGTGCCAAATGTACAAAGTGGTTTGAG
TATCAATTATCGTACTGGTAAGATTACAGTCAATCCCCACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.234

91.429

0.596
  endA Streptococcus pneumoniae D39

65.234

91.429

0.596
  endA Streptococcus pneumoniae R6

65.234

91.429

0.596
  endA Streptococcus pneumoniae TIGR4

65.234

91.429

0.596

Multiple sequence alignment