Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CWQ23_RS06440 Genome accession   NZ_CP025026
Coordinates   1222307..1222747 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain SGEHI2015-113     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217307..1227747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWQ23_RS06425 (CWQ23_06425) - 1217965..1218591 (-) 627 WP_000449636.1 GTP pyrophosphokinase -
  CWQ23_RS06430 (CWQ23_06430) rcrQ 1218699..1220453 (-) 1755 WP_000851080.1 ABC transporter ATP-binding protein Regulator
  CWQ23_RS06435 (CWQ23_06435) rcrP 1220443..1222260 (-) 1818 WP_000481818.1 ABC transporter ATP-binding protein Regulator
  CWQ23_RS06440 (CWQ23_06440) rcrR 1222307..1222747 (-) 441 WP_000431168.1 MarR family transcriptional regulator Regulator
  CWQ23_RS06445 (CWQ23_06445) - 1223016..1225088 (+) 2073 WP_000726914.1 bifunctional metallophosphatase/5'-nucleotidase -
  CWQ23_RS06450 (CWQ23_06450) - 1225125..1225535 (-) 411 WP_000594936.1 peptide deformylase -
  CWQ23_RS06455 (CWQ23_06455) gdhA 1225605..1226954 (-) 1350 WP_017647818.1 NADP-specific glutamate dehydrogenase -
  CWQ23_RS06460 (CWQ23_06460) - 1227122..1227631 (+) 510 WP_000870955.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=216209 CWQ23_RS06440 WP_000431168.1 1222307..1222747(-) (rcrR) [Streptococcus agalactiae strain SGEHI2015-113]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=216209 CWQ23_RS06440 WP_000431168.1 1222307..1222747(-) (rcrR) [Streptococcus agalactiae strain SGEHI2015-113]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411