Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   NMB_RS09000 Genome accession   NC_003112
Coordinates   1799914..1803123 (-) Length   1069 a.a.
NCBI ID   WP_010980978.1    Uniprot ID   Q9JY62
Organism   Neisseria meningitidis MC58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794914..1808123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS08980 (NMB1716) mtrC 1795182..1796420 (-) 1239 WP_002224968.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -
  NMB_RS08985 (NMB1717) mtrR 1796823..1797455 (+) 633 WP_002216625.1 multidrug efflux system transcriptional repressor MtrR -
  NMB_RS08990 (NMB1718) - 1797734..1797946 (-) 213 WP_002244266.1 hypothetical protein -
  NMB_RS08995 (NMB1719) mtrF 1798278..1799846 (+) 1569 WP_002224966.1 AbgT family antimetabolite efflux transporter MtrF -
  NMB_RS09000 (NMB1720) recC 1799914..1803123 (-) 3210 WP_010980978.1 exodeoxyribonuclease V subunit gamma Machinery gene
  NMB_RS09005 (NMB1721) - 1803225..1804634 (-) 1410 WP_002224963.1 PepSY-associated TM helix domain-containing protein -
  NMB_RS11790 (NMB1723) ccoP 1804836..1806167 (-) 1332 Protein_1744 cytochrome-c oxidase, cbb3-type subunit III -
  NMB_RS09015 (NMB1723a) - 1806191..1806361 (-) 171 WP_002212597.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  NMB_RS09020 (NMB1724) ccoO 1806366..1806977 (-) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 120579.38 Da        Isoelectric Point: 4.8472

>NTDB_id=21610 NMB_RS09000 WP_010980978.1 1799914..1803123(-) (recC) [Neisseria meningitidis MC58]
MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSEMA
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQA
VERMILGWMLPKGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLTDIVRIWRQPATVGEWVARCRDLLETLFQAEADDQK
SVQNLENEWVKWQAETELAQFSGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQ
NLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFEPQHADQIAEIYIEARCEGRDFAQTAARIGAESLLPSGELGRLWQQDFQTAAKQIDTAVLNS
PKLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAEMRQTFIVQSGETEILAEIA
QDRALQLLSEWMAFFNIGQNRPLPFFAKTSLATAEAFAQKQDWEAALKKAQTAYHGSKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTLAAAEKKEEAGEA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=21610 NMB_RS09000 WP_010980978.1 1799914..1803123(-) (recC) [Neisseria meningitidis MC58]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCATTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCGGCTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTACCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCGCCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGCGAGGCATTTCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCAGATTACCAGCTTGCGGGAC
AGCTTGCGGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGCGGCTCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGACGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAGCTGTTGGAATCTTTGAGCAGTGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATTTGCAACTTTTGCACAAGCTGTCCGAACATTGCGACGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
TACTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGTGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCT
GCTCGCCTCATTGGGCAAGCAGGGGCGGGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGGCGAAACGCCGGTAT
TTGAGGAAGGCGGGCGCGATACGCTTTTACACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAATGGCG
GGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCACGATATCGCCGTATTAACCCCGAATATCGAATCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGTGCGCAGGCATTGCCGTATTCCGTGTCAGACGTGAAA
ATCAGCCGCCGCCAACCGCTGTTTCATGCTTTGTCATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTTGTGCTTTTAGAAACCGCGCCCGTGTTGCGCCGTTTCGGACTGACTGAGGACGATTTACCGCTTTTGCACGACATGG
TTGCCGATTTGAACGTCCACTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTCACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCAAAGGCGGCAATCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAATCAAACCGCCATGTTCGGACGTTTTGCCGCCTTCCTCGAAACCCTGACGGATATTGTACGGATATGGCGGCAGC
CCGCAACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTCCAAGCTGAAGCCGATGACCAAAAG
TCAGTCCAAAACCTTGAAAACGAATGGGTCAAATGGCAGGCGGAAACCGAATTGGCGCAATTTTCCGGACAGTTGCCGCC
GCACACCGTCATCCGCCATATCCGACGCTTTCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCGTTCAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGTAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCCGCCAAAGGAGACCGCGCCCGCCGCGATGACGACCGCTACCT
GTTCCTCGAAGCCCTCATCAGCGCGCGTGAAATCCTCTACCTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAGC
TTGCCCCGTCTTCCCTGTTGGGCGAACTCATCGATACCGTTGCCGCTATGGCGGGCATCGGTAGCCGCCAACTTGCACAA
AACCTGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTTCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGATCAACCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGTTTCTGGCGCAACCCTGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGATCAAATCGC
CGAAATCTACATCGAAGCACGGTGCGAAGGACGGGATTTTGCCCAAACCGCCGCCCGCATCGGGGCGGAAAGCCTCCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACTGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGC
CCCAAACTGCCACCGCTTTCATATGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTG
CGGACAAGTGTTTTACGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTCTGCTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAATGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACAGGGCATTGCAGCTATTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCACCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCT
ACCACGGCAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGTCCGTCTGCTTGCCGACACGCTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGG
AGAAGCCTGA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(778-997)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JY62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

93.265

100

0.933

Multiple sequence alignment