Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BZG29_RS20270 Genome accession   NZ_CP019510
Coordinates   4627430..4628806 (-) Length   458 a.a.
NCBI ID   WP_070255485.1    Uniprot ID   -
Organism   Janthinobacterium sp. LM6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4622430..4633806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG29_RS20245 (BZG29_20240) rraA 4622594..4623088 (-) 495 WP_077406855.1 ribonuclease E activity regulator RraA -
  BZG29_RS20250 (BZG29_20245) - 4623121..4624356 (-) 1236 WP_077406858.1 MFS transporter -
  BZG29_RS20255 (BZG29_20250) - 4624457..4625257 (+) 801 WP_171985077.1 helix-turn-helix transcriptional regulator -
  BZG29_RS20260 (BZG29_20255) fliD 4625364..4626749 (-) 1386 WP_077406863.1 flagellar filament capping protein FliD -
  BZG29_RS20265 (BZG29_20260) - 4626978..4627238 (-) 261 WP_253192660.1 PilZ domain-containing protein -
  BZG29_RS20270 (BZG29_20265) radA 4627430..4628806 (-) 1377 WP_070255485.1 DNA repair protein RadA Machinery gene
  BZG29_RS20275 (BZG29_20270) alr 4628876..4629997 (-) 1122 WP_077406868.1 alanine racemase -
  BZG29_RS20280 (BZG29_20275) lplT 4630245..4631507 (+) 1263 WP_035820370.1 lysophospholipid transporter LplT -
  BZG29_RS20285 (BZG29_20280) - 4631685..4632632 (-) 948 WP_077406871.1 DUF1853 family protein -
  BZG29_RS20290 (BZG29_20285) - 4632625..4633524 (-) 900 WP_077406873.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49086.63 Da        Isoelectric Point: 7.2493

>NTDB_id=216097 BZG29_RS20270 WP_070255485.1 4627430..4628806(-) (radA) [Janthinobacterium sp. LM6]
MAKVKTIYTCSDCGAISNKWMGQCTSCNQWNTMVETLPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKIL
STLNDLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQVIEGLKVIGVERIDEAFNKLRDHE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=216097 BZG29_RS20270 WP_070255485.1 4627430..4628806(-) (radA) [Janthinobacterium sp. LM6]
ATGGCAAAAGTCAAGACCATCTACACGTGCAGCGATTGCGGCGCCATCAGCAACAAATGGATGGGGCAATGCACCTCGTG
CAACCAGTGGAACACCATGGTGGAAACCCTGCCCGAGACGGGCGGTAACAACCGCTATTCGAATCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGCTCTCGCTCGACGATATCGACGCCATCGACGTGCCCCGCTTCGGCACGGGCATCGAGGAA
TTCGACCGCGTGCTGGGCGGCGGCATGGTGGCGGGCGGCGTCGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCCAACATGTCGCATCACAAGCGCGTGCTGTACGTCAGCGGCGAGGAATCGGGCGCGCAGA
TCGCCCTGCGCGCCAAGCGCCTCGTCATCGACGCCAAGGAACTCAAACTGCAGGCCGAGATCCAACTGGAAAAGATCCTG
TCCACCTTGAACGACCTGAAGCCGGAAGTGGTGGTGATCGACTCCATCCAGACCGTGTATTCGGACGCCCTCAGCTCGGC
GCCCGGTTCCGTGGCGCAAGTGCGCGAATGCGCGGCCCAGCTCACGCGCGCGGCCAAGCAGACGGGTGTGACCATCATTT
TAGTCGGCCACGTGACGAAAGAGGGCGCGCTGGCCGGCCCCCGCGTGCTCGAACACATCGTCGACACGGTGCTGTACTTT
GAGGGCGACGCCCATTCCAGCTTCCGCCTCGTGCGTGCCATCAAGAACCGTTTCGGCGCCGTCAATGAACTGGGCGTGTT
CGCCATGACGGAAAAGGGCTTGAAAGGGGTGTCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGACAACCAGGTGCCCG
GCTCGTGCGTGATGGTGACGCAGGAAGGCACGCGTCCGCTGCTGGTGGAAATCCAGGCCCTGGTCGACACCAGCCACTTG
CCGAATGCGCGCCGCTTGTCCGTCGGCCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCCGTGGCGCACCGCCACGCGGG
CATCGCTGCCTTCGACCAGGATGTGTTCATCAACGCCGTCGGCGGTGTCAAAATTACGGAACCGGCGGCCGACCTGGCAG
TGTTGCTGGCGATTAACTCGTCGATGCGCAACAAACCCTTGCCGCGGGGCCTGGTGGTGTTTGGCGAAGTGGGCCTGGCC
GGTGAAATCCGTCCCGCGCCACGGGGCCAGGAGCGCTTGCGCGAAGCGGCCAAGCTGGGCTTTACCCTGGCCGTGGTGCC
CAAGTCGAACTTGCCGAAACAGGTCATCGAGGGCCTCAAGGTCATCGGCGTCGAGCGCATCGATGAAGCATTCAACAAGC
TACGAGACCACGAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.584

100

0.487
  radA Streptococcus pneumoniae Rx1

47.609

100

0.478
  radA Streptococcus pneumoniae D39

47.609

100

0.478
  radA Streptococcus pneumoniae R6

47.609

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.609

100

0.478
  radA Streptococcus mitis NCTC 12261

47.609

100

0.478
  radA Streptococcus mitis SK321

47.391

100

0.476

Multiple sequence alignment