Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BZG29_RS17555 Genome accession   NZ_CP019510
Coordinates   3996147..3998570 (-) Length   807 a.a.
NCBI ID   WP_077405614.1    Uniprot ID   -
Organism   Janthinobacterium sp. LM6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3991147..4003570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG29_RS17525 (BZG29_17505) dcd 3991462..3992031 (-) 570 WP_034755486.1 dCTP deaminase -
  BZG29_RS17530 (BZG29_17510) - 3992165..3992965 (-) 801 WP_077405598.1 alpha/beta hydrolase -
  BZG29_RS17535 (BZG29_17515) - 3993024..3993719 (-) 696 WP_077405601.1 HAD family phosphatase -
  BZG29_RS17540 (BZG29_17520) - 3993741..3994502 (-) 762 WP_077405604.1 TSUP family transporter -
  BZG29_RS17545 (BZG29_17525) - 3994654..3995577 (+) 924 WP_077405608.1 LysR family transcriptional regulator -
  BZG29_RS17550 (BZG29_17530) - 3995581..3996102 (-) 522 WP_077405611.1 GNAT family N-acetyltransferase -
  BZG29_RS17555 (BZG29_17535) comA 3996147..3998570 (-) 2424 WP_077405614.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BZG29_RS17560 (BZG29_17540) - 3998765..3999598 (+) 834 WP_077405617.1 class I SAM-dependent methyltransferase -
  BZG29_RS17565 (BZG29_17545) - 3999684..4001675 (+) 1992 WP_077405620.1 helicase-related protein -
  BZG29_RS17570 (BZG29_17550) - 4001686..4002159 (-) 474 WP_171985042.1 T6SS effector amidase Tae4 family protein -
  BZG29_RS17575 (BZG29_17555) - 4002254..4003492 (-) 1239 WP_077405626.1 PQQ-dependent sugar dehydrogenase -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 87817.52 Da        Isoelectric Point: 10.0625

>NTDB_id=216096 BZG29_RS17555 WP_077405614.1 3996147..3998570(-) (comA) [Janthinobacterium sp. LM6]
MRTLILGFAAGAAWLQTQASLPPYAGVLLWVIAGMSLLMVLLLRRHARWRCVVALAAGVALGFYWAAWLAQVAMAPQLAL
ADEGQDIIVTGTVASLPYRFEQGVRFNFAVEKALGAKVPPLIALSWYAGFRDEVTNEVGDVQPGERWRLTVRLQRPHGNA
NPMGFDYEAWLLEQGVRATGYVRPQPRADTPNVRVAAFVPGFGNVVEASRAALRARILRSLEDRQYAGVIVALVVGDQRA
IPQSDWQVFNRTGVSHLISISGLHITMIAGLFALGAGALWRRSFFTDWQLPLRLPAQKVAALAGALAAFVYVLLAGFGVP
AQRTLYMLLVVALALWLGRITSIVHILCLALGVVVLLDPWAVLWPGFWLSFGTVATMLYATAGRTTAPLPESASRWRRLR
AAVALGAHTQYVVTVGLVPLTMLLFSQVSLVSPVANALAIPVISLIVTPLSLAGSLLPAPLCDWLLLLAHAIVQMLAQVL
DWLGARRFAVWTAPAPPMWSFCWALFGTAWLLAPRGWPHRWAGMLGWLPLLTALPSSPPPGQMWITAFDVGQGMAVLVET
HDHRLLYDTGPAYSLDSDGASRVIVPYLRARGISKLDGVIISHSDLDHAGGAMSLLENVQVGWLASSLFDGHPAVEARRQ
ARRPYLHCVTGQSWTWEGVHFAMLHPLPASHTDISLKPNARSCTVKITAGKHAILLAGDIEAAQEAQLLARSLEGELAAD
VLLAPHHGSGTSSTPAFLNAVHPALAIFQVGHRNRYKHPKPQVYARYGDMGIARLRTDVTGAVVLAFGDRIEITQYRASR
PRYWQGR

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=216096 BZG29_RS17555 WP_077405614.1 3996147..3998570(-) (comA) [Janthinobacterium sp. LM6]
ATGCGCACCCTGATACTCGGCTTTGCCGCTGGCGCCGCCTGGTTGCAGACGCAGGCCAGCTTGCCGCCGTACGCGGGCGT
GTTGCTGTGGGTGATCGCTGGCATGTCGCTGCTGATGGTACTGTTGCTGCGCCGTCACGCGCGCTGGCGTTGTGTTGTTG
CGCTTGCCGCTGGTGTGGCACTGGGCTTTTATTGGGCCGCATGGCTGGCCCAGGTCGCCATGGCGCCGCAACTGGCGCTG
GCTGACGAAGGACAGGACATTATCGTCACGGGCACGGTGGCCAGCCTGCCGTACCGCTTCGAGCAGGGCGTGCGCTTCAA
TTTTGCCGTGGAGAAGGCGCTTGGGGCGAAGGTGCCTCCCCTGATCGCCCTGTCCTGGTACGCGGGTTTTCGTGATGAAG
TGACGAACGAGGTGGGCGACGTGCAGCCGGGCGAGCGCTGGCGGCTGACGGTGCGGCTGCAGCGTCCGCACGGCAACGCG
AATCCCATGGGTTTCGATTACGAGGCGTGGTTGCTGGAGCAGGGCGTGCGCGCCACCGGCTATGTGCGGCCGCAGCCGCG
CGCCGATACGCCGAACGTGCGCGTGGCCGCCTTCGTGCCCGGTTTCGGCAATGTGGTGGAAGCGAGCCGCGCGGCATTGC
GCGCGCGCATACTGCGCAGCCTGGAAGATAGACAGTATGCGGGCGTGATCGTGGCGCTGGTGGTGGGCGACCAGCGCGCC
ATCCCCCAGTCGGACTGGCAGGTATTCAACCGCACGGGCGTGAGCCACTTGATTTCGATTTCGGGCTTGCACATCACCAT
GATCGCGGGCTTGTTCGCCTTGGGCGCGGGCGCGCTGTGGCGGCGCTCATTCTTTACCGACTGGCAACTGCCCTTGCGGC
TGCCGGCGCAAAAGGTGGCGGCGCTGGCCGGCGCGCTGGCGGCATTTGTGTATGTACTGCTGGCGGGCTTCGGCGTGCCG
GCGCAGCGCACTTTATATATGTTGCTGGTGGTGGCGCTGGCCTTGTGGCTGGGGCGCATCACCAGCATCGTCCATATCTT
GTGCCTGGCGCTGGGCGTGGTCGTGCTGCTTGATCCGTGGGCCGTGCTGTGGCCCGGTTTCTGGCTGTCGTTCGGCACCG
TCGCCACCATGCTGTACGCGACGGCGGGCCGCACCACGGCACCCTTGCCGGAGAGCGCCAGCCGCTGGCGCCGTTTGCGC
GCCGCCGTGGCGCTCGGCGCGCACACGCAGTATGTGGTGACGGTGGGGCTGGTGCCGTTGACGATGCTGCTGTTTTCGCA
AGTCTCGCTCGTGTCCCCCGTCGCCAATGCGCTGGCCATACCCGTCATCAGCCTGATCGTCACGCCCTTGTCCCTGGCGG
GCAGCCTGCTGCCGGCGCCTCTGTGTGACTGGTTGTTGCTGCTGGCGCACGCCATCGTGCAGATGCTGGCGCAGGTGCTG
GACTGGCTCGGTGCGCGCCGCTTTGCCGTGTGGACGGCGCCCGCGCCCCCAATGTGGAGTTTTTGCTGGGCATTGTTCGG
CACGGCCTGGCTTTTGGCGCCACGGGGATGGCCCCATAGGTGGGCGGGCATGCTGGGCTGGCTGCCGCTGCTTACGGCCT
TGCCATCGAGTCCGCCACCTGGCCAGATGTGGATCACGGCCTTTGATGTGGGACAAGGCATGGCCGTGCTGGTGGAAACC
CACGATCACCGACTGCTGTACGACACGGGGCCCGCCTACAGTCTCGATTCCGACGGCGCCAGCCGTGTCATCGTGCCGTA
TCTGCGCGCACGGGGTATCAGCAAGCTGGACGGCGTGATCATTTCCCACAGCGACCTCGATCACGCGGGCGGCGCCATGT
CTCTGTTGGAGAACGTGCAAGTGGGCTGGCTGGCTTCGTCCCTGTTCGATGGCCACCCGGCCGTCGAAGCGCGGCGCCAA
GCGCGGCGTCCGTATCTGCATTGCGTGACCGGTCAAAGCTGGACCTGGGAAGGCGTACACTTCGCCATGCTGCATCCATT
GCCCGCCAGCCACACGGACATTTCCCTGAAACCAAACGCCCGCAGCTGCACCGTGAAGATCACGGCCGGCAAGCATGCAA
TCTTGCTGGCTGGCGACATCGAGGCGGCGCAGGAGGCGCAATTGCTGGCACGCTCGCTGGAGGGCGAACTGGCCGCCGAC
GTGCTGCTGGCGCCGCACCACGGCAGCGGCACCTCGTCGACACCGGCATTTCTGAACGCCGTCCATCCGGCCCTGGCAAT
TTTTCAGGTCGGACACCGGAACCGCTATAAACATCCGAAGCCGCAAGTGTATGCGCGCTATGGCGACATGGGCATTGCCC
GGCTGCGCACGGATGTGACGGGGGCGGTGGTGCTGGCGTTTGGCGATCGTATTGAGATAACGCAGTATCGGGCCAGCCGG
CCGCGCTACTGGCAGGGGCGCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(233-516)

Metallo-beta-lactamase superfamily (Lactamase_B)

(550-642)

Domain of unknown function (DUF4131) (DUF4131)

(23-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.681

100

0.497

Multiple sequence alignment