Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BZG29_RS03630 Genome accession   NZ_CP019510
Coordinates   823349..824827 (+) Length   492 a.a.
NCBI ID   WP_077398951.1    Uniprot ID   -
Organism   Janthinobacterium sp. LM6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 818349..829827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG29_RS03605 (BZG29_03610) - 819785..820795 (+) 1011 WP_077398941.1 KpsF/GutQ family sugar-phosphate isomerase -
  BZG29_RS03610 (BZG29_03615) - 820795..821328 (+) 534 WP_077398943.1 HAD hydrolase family protein -
  BZG29_RS03615 (BZG29_03620) lptC 821371..821982 (+) 612 WP_253192771.1 LPS export ABC transporter periplasmic protein LptC -
  BZG29_RS03620 (BZG29_03625) lptA 822008..822589 (+) 582 WP_077398947.1 lipopolysaccharide transport periplasmic protein LptA -
  BZG29_RS03625 (BZG29_03630) lptB 822589..823344 (+) 756 WP_077398949.1 LPS export ABC transporter ATP-binding protein -
  BZG29_RS03630 (BZG29_03635) rpoN/rpoN1 823349..824827 (+) 1479 WP_077398951.1 RNA polymerase factor sigma-54 Machinery gene
  BZG29_RS03635 (BZG29_03640) raiA 824897..825259 (+) 363 WP_034778388.1 ribosome-associated translation inhibitor RaiA -
  BZG29_RS03640 (BZG29_03645) - 825388..826473 (+) 1086 WP_077398953.1 enoyl-CoA hydratase/isomerase family protein -
  BZG29_RS03645 (BZG29_03650) rapZ 826478..827341 (-) 864 WP_035824128.1 RNase adapter RapZ -
  BZG29_RS03650 (BZG29_03655) hprK 827561..828496 (-) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  BZG29_RS03655 (BZG29_03660) - 828533..829015 (-) 483 WP_071079718.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54569.19 Da        Isoelectric Point: 5.1050

>NTDB_id=216087 BZG29_RS03630 WP_077398951.1 823349..824827(+) (rpoN/rpoN1) [Janthinobacterium sp. LM6]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSLRLLSDGALSSTAAPAEAPPQPP
SQEAPAAPAEGEAFDGEGGDSPAAADGGDSDWSEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPEELEIDADEMRTALSLLQSFDPPGVGARNASECLALQIRRLPHIAMVTRRMALVIVE
KHLAWFAQRDFNKLKKALDCDDEDLREAQTVIRQCNPHPGAVFASDVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=216087 BZG29_RS03630 WP_077398951.1 823349..824827(+) (rpoN/rpoN1) [Janthinobacterium sp. LM6]
ATGAAACAATCATTGCAGCTGCGCACTTCGCAGCACCTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGTTGCA
ATTGTCTACCCTGGAATTGCACCAGGAACTCGAGCAATTGCTGACGGACAATCCCTTGCTCGAACGCCTAGACGATCCGC
TCGACCGTTCGCTGCGCCTGCTGTCCGACGGGGCCTTGAGTTCCACGGCCGCGCCAGCCGAAGCGCCGCCCCAGCCTCCA
AGCCAGGAGGCGCCCGCGGCGCCGGCCGAAGGGGAAGCGTTTGACGGCGAGGGGGGCGACAGCCCGGCCGCCGCGGATGG
CGGCGACAGCGACTGGAGCGAGGCAAGCCGGGGCAAGGCGCCCGACGACGAAGATTCGCGTCCGCAATTGGAGGCCCATC
ACTGCACCCTGCGCGAACACCTGATGGAGCAGATGCGCGTGACGGTGCTCGAATTGCGCGACCGCGCGCTGGTCGAGCTG
ATCATCGACGCGCTCGACGACAATGGCTACCTGGAAGAGTCGCTCGACGACATCCTGGCGCGCCTGCCGGAAGAGCTGGA
AATCGACGCCGACGAGATGCGCACGGCCTTGTCGCTGCTGCAAAGTTTCGATCCGCCGGGCGTGGGCGCGCGCAACGCGT
CCGAATGCCTGGCCCTGCAAATCAGGCGCTTGCCGCACATCGCCATGGTGACGCGGCGCATGGCCCTCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTCAAAAAAGCCCTCGATTGCGACGATGAAGACTTGCGCGA
AGCGCAGACGGTGATTCGCCAGTGCAATCCGCATCCGGGCGCCGTGTTCGCCTCGGACGTCTCCGATTACGTGGTGCCTG
ACGTCGTCGTCAAGCGCGCGCGCAATGGCTGGCAAGTCACCCTGAACAACGACGTCATGCCGCGCCTGCGCGTCAACGCC
ATGTACGCCAACCTGCTCAAGCAGGGCAAGGGGGAGGGCGCCATGGGCGCACAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGCTTTGACACGATCCTGCGCGTGGCGCAGGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCATG
GGGCCGTTGCCATGCGCCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACTCAAAAGTACATGCTGACCCCGCACGGCATGTTTGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCGTCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCA
TTAAAAATTCCGCCAGTGAGCCTGCGTAAGTGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.913

100

0.624

Multiple sequence alignment