Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CFP59_RS22150 Genome accession   NZ_CP025018
Coordinates   5364624..5366582 (-) Length   652 a.a.
NCBI ID   WP_100806599.1    Uniprot ID   -
Organism   Streptomyces sp. M56     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5359624..5371582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFP59_RS22130 (CFP59_04362) - 5359998..5361116 (-) 1119 WP_100806596.1 trypsin-like peptidase domain-containing protein -
  CFP59_RS22135 (CFP59_04363) - 5361488..5362510 (-) 1023 WP_100806597.1 LacI family DNA-binding transcriptional regulator -
  CFP59_RS22140 (CFP59_04364) - 5362534..5363346 (-) 813 WP_069873572.1 response regulator transcription factor -
  CFP59_RS22145 (CFP59_04365) - 5363674..5364543 (+) 870 WP_231981354.1 alpha/beta fold hydrolase -
  CFP59_RS22150 (CFP59_04366) rcrQ 5364624..5366582 (-) 1959 WP_100806599.1 ABC transporter ATP-binding protein Regulator
  CFP59_RS22155 (CFP59_04367) rcrP 5366698..5368440 (-) 1743 WP_159398918.1 ABC transporter ATP-binding protein Regulator
  CFP59_RS22160 - 5368562..5368837 (+) 276 WP_069873578.1 MoaD/ThiS family protein -
  CFP59_RS22165 - 5368849..5370345 (+) 1497 WP_100809269.1 hypothetical protein -
  CFP59_RS22170 (CFP59_04370) - 5370432..5371118 (+) 687 WP_069873579.1 DUF2993 domain-containing protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 70722.37 Da        Isoelectric Point: 6.6346

>NTDB_id=216087 CFP59_RS22150 WP_100806599.1 5364624..5366582(-) (rcrQ) [Streptomyces sp. M56]
MSGTTPPRRGPAPAAGPGRFMGGQPTERSMDFRGSSRRLLARLRPERGIALLVLALGTVSIGLSVVGPKILGAATDLIFA
GIVGRQLPDGVSKEQAVQWLRDRDQGTVADMVASMDVTPGQGIDFHAVGVVLLWVTALYVVSSLLNLLQARVATVVVQRS
VFRLREDVEHKLARLPLSYFDKQSRGEVLSRATNDIDNIQQTLQQTLSQIMASLLMIVGVLSMMFWISPLLALVALITVP
VSVWVTTRIGKRAQPQFVAQWKTTGKLNAHIEEMYTGHSLVKVFGREKESAELFREQNDKLYEAGFRAQFISGLIQPSMT
FIGNLNYVLVAVVGGLRVASGALSIGDVQAFVQYTRQFSQPLTQVASMANMVQSGVASAERVFELLDAPEQSAEPVEARR
PEVVRGQVAFEEVAFRYQPDKPLIEGLSLSVRPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVNIAEMSREEL
RSHFGMVLQDTWLFGGTIAENIAYGAQGAGFEKIVAAAKATYVDRFVRMLPDGYDTVIDEEGSNVSAGEKQLITIARAFL
SEPSILVLDEATSSVDTRTEVLIQRAMASLRSGRTSFVIAHRLSTIRDADVILVMESGRIVEQGSHDALLAAGGAYARLY
ASQFAEPVAEAE

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=216087 CFP59_RS22150 WP_100806599.1 5364624..5366582(-) (rcrQ) [Streptomyces sp. M56]
ATGAGCGGCACCACGCCGCCCCGCAGGGGACCGGCGCCCGCCGCCGGGCCCGGGCGTTTCATGGGCGGGCAGCCCACCGA
GCGGTCCATGGACTTCCGCGGCTCCAGCCGTCGGCTGCTGGCCCGGCTCCGCCCCGAGCGCGGTATCGCGCTGCTGGTGC
TCGCGCTGGGCACGGTCAGCATCGGTCTTTCGGTGGTGGGCCCGAAGATCCTCGGTGCGGCCACCGACCTGATCTTCGCG
GGCATCGTCGGACGGCAGCTGCCCGACGGCGTCAGCAAGGAGCAGGCCGTCCAGTGGCTGCGCGACAGGGACCAGGGCAC
GGTCGCCGACATGGTCGCCTCGATGGACGTCACCCCCGGCCAGGGCATCGACTTCCACGCGGTCGGCGTCGTCCTGCTGT
GGGTCACGGCGCTGTATGTCGTCTCCTCGCTCCTGAACCTCCTCCAAGCGCGGGTGGCCACGGTCGTCGTGCAGCGCTCG
GTCTTCCGGCTGCGCGAGGACGTGGAGCACAAGCTGGCGCGGCTGCCGCTCTCGTACTTCGACAAGCAGTCGCGCGGCGA
GGTGCTCTCCCGTGCCACCAACGACATCGACAACATCCAGCAGACGCTCCAGCAGACCCTCAGCCAGATCATGGCCTCGC
TGCTGATGATCGTGGGCGTGCTGTCGATGATGTTCTGGATCTCGCCGCTGCTGGCGCTGGTGGCGCTGATCACCGTCCCG
GTCTCGGTGTGGGTGACGACGCGCATCGGCAAGCGCGCACAGCCGCAGTTCGTGGCCCAGTGGAAGACGACGGGCAAGCT
CAACGCCCATATCGAAGAGATGTACACCGGCCATTCGCTGGTGAAGGTCTTCGGGCGGGAGAAGGAGTCCGCGGAGCTGT
TCCGGGAGCAGAACGACAAGCTCTACGAGGCGGGCTTCCGGGCCCAGTTCATCTCCGGGCTGATCCAGCCCTCGATGACG
TTCATCGGCAACCTCAACTATGTGCTGGTGGCCGTGGTCGGCGGGCTCCGGGTGGCTTCCGGCGCGCTGTCGATCGGCGA
CGTCCAGGCGTTCGTCCAGTACACCCGGCAGTTCAGCCAGCCGCTTACCCAGGTGGCCTCCATGGCCAATATGGTCCAGT
CGGGCGTGGCCTCCGCCGAGCGGGTCTTCGAACTGCTGGACGCGCCGGAGCAGAGCGCGGAGCCGGTGGAGGCGCGGCGG
CCGGAGGTGGTGCGCGGGCAGGTCGCGTTCGAGGAGGTCGCCTTCCGCTATCAGCCGGACAAGCCGCTCATCGAGGGTCT
GTCGCTGTCGGTGCGGCCGGGGCAGACCGTGGCCATCGTCGGGCCGACCGGCGCGGGGAAGACCACGCTGGTCAATCTGC
TGATGCGGTTCTACGAGGTCAGCGGCGGTCGGATCACGCTCGACGGGGTGAACATCGCCGAGATGTCACGGGAGGAGCTG
CGCTCCCATTTCGGGATGGTCCTCCAGGACACCTGGCTGTTCGGCGGGACGATCGCCGAGAACATCGCGTACGGCGCGCA
GGGCGCCGGTTTCGAGAAGATCGTGGCGGCGGCGAAGGCCACCTATGTGGACCGCTTCGTACGGATGCTGCCGGACGGCT
ACGACACGGTGATCGACGAAGAGGGCTCCAACGTCAGCGCCGGTGAGAAGCAGCTGATCACGATCGCGCGGGCGTTCCTC
TCCGAGCCGTCGATCCTGGTGCTGGACGAGGCCACCAGCTCGGTCGACACCCGCACCGAGGTCCTCATCCAGCGGGCGAT
GGCCTCGCTGCGGAGCGGTCGCACCAGCTTTGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACGTGATCCTGG
TGATGGAGTCGGGGCGGATCGTGGAGCAGGGCTCCCATGACGCGCTCCTCGCGGCCGGCGGTGCGTACGCCCGGCTCTAC
GCGTCCCAGTTCGCCGAGCCGGTGGCGGAGGCCGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(69-362)

ABC transporter (ABC_tran)

(425-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.385

95.245

0.394

Multiple sequence alignment