Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CFP59_RS00605 Genome accession   NZ_CP025018
Coordinates   122417..123052 (+) Length   211 a.a.
NCBI ID   WP_100809014.1    Uniprot ID   -
Organism   Streptomyces sp. M56     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 117417..128052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFP59_RS48670 (CFP59_00112) - 117778..117987 (+) 210 WP_159398795.1 hypothetical protein -
  CFP59_RS00580 (CFP59_00113) - 118035..118595 (-) 561 WP_231981074.1 SMI1/KNR4 family protein -
  CFP59_RS00585 - 118617..118889 (+) 273 Protein_112 FAD-dependent oxidoreductase -
  CFP59_RS00590 (CFP59_00115) - 119265..119948 (-) 684 WP_100804519.1 ABC transporter ATP-binding protein -
  CFP59_RS00595 (CFP59_00116) - 119945..121033 (-) 1089 WP_100804520.1 ABC transporter permease -
  CFP59_RS00600 (CFP59_00117) - 121206..122420 (+) 1215 WP_100804521.1 sensor histidine kinase -
  CFP59_RS00605 (CFP59_00118) vraR 122417..123052 (+) 636 WP_100809014.1 response regulator transcription factor Regulator
  CFP59_RS00610 (CFP59_00119) - 123268..123801 (+) 534 WP_100804522.1 hypothetical protein -
  CFP59_RS00615 (CFP59_00120) - 123815..124822 (+) 1008 WP_231981075.1 hypothetical protein -
  CFP59_RS00620 (CFP59_00121) - 124844..126178 (+) 1335 WP_100804524.1 Dyp-type peroxidase -
  CFP59_RS00625 (CFP59_00122) - 126239..127174 (+) 936 WP_100804525.1 bile acid:sodium symporter -
  CFP59_RS00630 (CFP59_00123) - 127186..127905 (-) 720 WP_100804526.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 21831.08 Da        Isoelectric Point: 6.1106

>NTDB_id=216043 CFP59_RS00605 WP_100809014.1 122417..123052(+) (vraR) [Streptomyces sp. M56]
MTDALIRILLADDHPVVRAGLRAVLETEPGLVIMAEAATAEDAVARAAEGGIDVVLMDLQFGKGMGGAEATAQIIARPGA
PRVVVVTTYDSDADALPAIEAGATGYLLKDAPPEDLAAAVRTAAAGRTALAPTVADRLMNRLRTPGTALTRRETEVLSLV
AEGLSNQAIGHRLHLTEGTVKSHLARVYTKLGVDSRTAAVATATGLGLIRR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=216043 CFP59_RS00605 WP_100809014.1 122417..123052(+) (vraR) [Streptomyces sp. M56]
GTGACCGACGCCCTGATCCGCATCCTCCTGGCCGACGACCACCCGGTAGTACGGGCCGGGCTGCGTGCGGTACTGGAAAC
CGAACCCGGCCTCGTCATCATGGCCGAGGCCGCCACCGCCGAGGACGCCGTCGCCCGTGCCGCCGAGGGCGGCATCGACG
TCGTCCTCATGGACCTGCAGTTCGGCAAGGGCATGGGCGGCGCCGAGGCCACCGCCCAGATCATCGCCCGACCGGGCGCC
CCCCGCGTCGTGGTCGTCACCACCTATGACTCGGACGCCGACGCCCTGCCCGCCATCGAAGCCGGCGCCACCGGCTACCT
CCTCAAGGACGCCCCGCCCGAAGACCTGGCCGCCGCCGTACGCACCGCCGCCGCCGGACGTACCGCCCTCGCCCCCACGG
TCGCCGACCGGCTCATGAACCGGCTGCGCACACCCGGCACCGCCCTGACCCGGCGCGAGACCGAAGTCCTCAGTCTGGTT
GCCGAGGGACTGTCCAACCAGGCCATCGGCCACCGCCTCCACCTCACCGAGGGAACCGTCAAGTCCCACCTCGCGCGCGT
CTACACCAAACTCGGCGTCGACTCCCGCACCGCCGCCGTCGCCACCGCAACCGGCCTCGGCCTCATCCGCCGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.538

98.578

0.36