Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CU118_RS13320 Genome accession   NZ_CP024998
Coordinates   2628743..2629588 (+) Length   281 a.a.
NCBI ID   WP_054189506.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-99-44     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2623743..2634588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU118_RS13300 (CU118_13300) - 2624010..2625851 (-) 1842 WP_054189503.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  CU118_RS13305 (CU118_13305) metC 2625820..2626980 (-) 1161 WP_054189504.1 cystathionine beta-lyase MetC -
  CU118_RS13310 (CU118_13310) - 2626977..2628080 (-) 1104 WP_054189505.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  CU118_RS13320 (CU118_13320) spo0J 2628743..2629588 (+) 846 WP_054189506.1 ParB/RepB/Spo0J family partition protein Regulator
  CU118_RS13325 (CU118_13325) - 2629743..2630624 (+) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  CU118_RS13330 (CU118_13330) - 2630654..2630857 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  CU118_RS13335 (CU118_13335) ychF 2630869..2631966 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  CU118_RS13340 (CU118_13340) - 2632052..2632243 (-) 192 WP_001052483.1 hypothetical protein -
  CU118_RS13350 (CU118_13350) rpsF 2632488..2632784 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  CU118_RS13355 (CU118_13355) ssbA 2632805..2633308 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  CU118_RS13360 (CU118_13360) rpsR 2633360..2633602 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32770.79 Da        Isoelectric Point: 10.0000

>NTDB_id=216039 CU118_RS13320 WP_054189506.1 2628743..2629588(+) (spo0J) [Staphylococcus aureus strain 55-99-44]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLESHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRLIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=216039 CU118_RS13320 WP_054189506.1 2628743..2629588(+) (spo0J) [Staphylococcus aureus strain 55-99-44]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAACAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAACCTAGAAAAACATTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGAATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATATGTATCAGCGATTATTAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGCGTTAGATATTTAGAAAGCCATGTCAATGAATTAAAAA
ATGTTTCGTCAAAATCGGAAACAGATAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTGGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGGTTAATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.379

92.883

0.384