Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NMB_RS06410 Genome accession   NC_003112
Coordinates   1239271..1241016 (-) Length   581 a.a.
NCBI ID   WP_002225198.1    Uniprot ID   Q9JZ93
Organism   Neisseria meningitidis MC58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1234271..1246016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS06385 (NMB1229) - 1234483..1234917 (+) 435 WP_002217157.1 hypothetical protein -
  NMB_RS06390 (NMB1230) - 1234976..1235245 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  NMB_RS06395 (NMB1231) lon 1235427..1237889 (-) 2463 WP_002225200.1 endopeptidase La -
  NMB_RS06400 - 1237989..1238165 (+) 177 WP_153309848.1 nitric oxide synthase -
  NMB_RS06405 (NMB1232) - 1238140..1239243 (+) 1104 Protein_1242 methyltransferase -
  NMB_RS06410 (NMB1233) recD 1239271..1241016 (-) 1746 WP_002225198.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMB_RS06415 (NMB1234) lolD 1241084..1241779 (-) 696 WP_002225197.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMB_RS06420 (NMB1235) - 1241772..1243019 (-) 1248 WP_002225196.1 lipoprotein-releasing ABC transporter permease subunit -
  NMB_RS06425 (NMB1236) - 1243224..1243502 (+) 279 WP_002213502.1 hypothetical protein -
  NMB_RS06430 (NMB1237) recR 1243558..1244175 (-) 618 WP_002217147.1 recombination mediator RecR -
  NMB_RS06435 (NMB1238) - 1244242..1245780 (-) 1539 WP_002225194.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62930.56 Da        Isoelectric Point: 5.8844

>NTDB_id=21602 NMB_RS06410 WP_002225198.1 1239271..1241016(-) (recD) [Neisseria meningitidis MC58]
MERQTDEFAQAAARAAIRFLEHYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCRHVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=21602 NMB_RS06410 WP_002225198.1 1239271..1241016(-) (recD) [Neisseria meningitidis MC58]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACACTATGCGGGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTTGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGGCACATCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATAGGGGCGGTGCTGTCCGTTTTGTCACAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCACCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCACACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCGGGCATT
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCCGCCATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCATATTTTGCCGGAGAGCCGATTATGATCAGGCAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATACCGGGAAGTATGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGAGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GCCACCGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JZ93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95.525

100

0.955

Multiple sequence alignment