Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CU118_RS05160 Genome accession   NZ_CP024998
Coordinates   1044037..1045716 (-) Length   559 a.a.
NCBI ID   WP_054190012.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-99-44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1039037..1050716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU118_RS05140 (CU118_05140) - 1039188..1040462 (-) 1275 WP_054190008.1 dihydrolipoamide acetyltransferase family protein -
  CU118_RS05145 (CU118_05145) - 1040475..1041458 (-) 984 WP_054190009.1 alpha-ketoacid dehydrogenase subunit beta -
  CU118_RS05150 (CU118_05150) - 1041451..1042449 (-) 999 WP_054190010.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  CU118_RS05155 (CU118_05155) lpdA 1042465..1043886 (-) 1422 WP_054190011.1 dihydrolipoyl dehydrogenase -
  CU118_RS05160 (CU118_05160) recN 1044037..1045716 (-) 1680 WP_054190012.1 DNA repair protein RecN Machinery gene
  CU118_RS05165 (CU118_05165) ahrC 1045732..1046184 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  CU118_RS05170 (CU118_05170) - 1046613..1047494 (-) 882 WP_054190013.1 polyprenyl synthetase family protein -
  CU118_RS05175 (CU118_05175) - 1047472..1047702 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  CU118_RS05180 (CU118_05180) xseA 1047695..1049032 (-) 1338 WP_054190014.1 exodeoxyribonuclease VII large subunit -
  CU118_RS05185 (CU118_05185) nusB 1049049..1049438 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  CU118_RS05190 (CU118_05190) - 1049498..1049860 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64170.80 Da        Isoelectric Point: 4.7593

>NTDB_id=215995 CU118_RS05160 WP_054190012.1 1044037..1045716(-) (recN) [Staphylococcus aureus strain 55-99-44]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLV
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALHNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRCR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=215995 CU118_RS05160 WP_054190012.1 1044037..1045716(-) (recN) [Staphylococcus aureus strain 55-99-44]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGTGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAATCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGTT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAC
ATTTCAGAATTAATCGCATATCAAGAAAAGCTAAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGCATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAACGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTCATATGCATTTCTCACTTGCCACAAGTAGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATAGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAGATGATACAACACAATCAAAGATGCAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.857

100

0.44

Multiple sequence alignment