Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BZG34_RS00325 Genome accession   NZ_CP019467
Coordinates   53239..56385 (-) Length   1048 a.a.
NCBI ID   WP_119160493.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain RIVM0640     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48239..61385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG34_RS00300 (BZG34_00290) - 49728..50117 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  BZG34_RS00305 (BZG34_00295) - 50280..50659 (-) 380 Protein_50 VOC family protein -
  BZG34_RS00310 (BZG34_00300) carA 50713..51846 (-) 1134 WP_003694721.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  BZG34_RS00325 (BZG34_00325) pilC 53239..56385 (-) 3147 WP_119160493.1 PilC family type IV pilus tip adhesin Machinery gene
  BZG34_RS00345 (BZG34_00340) apbC 57795..58874 (-) 1080 WP_003699443.1 iron-sulfur cluster carrier protein ApbC -
  BZG34_RS00355 (BZG34_00350) - 59248..59757 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  BZG34_RS00365 (BZG34_00355) nadR 60098..60538 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  BZG34_RS00370 (BZG34_00360) hpaC 60653..61153 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1048 a.a.        Molecular weight: 115006.28 Da        Isoelectric Point: 9.9948

>NTDB_id=215993 BZG34_RS00325 WP_119160493.1 53239..56385(-) (pilC) [Neisseria gonorrhoeae strain RIVM0640]
MNKTLKRRVFRHTALYAAILMFSHTGGGGGQAQAQTYKYAIVMNERKQPEVKWKGQYNQSALKDKGRERTFSHTSQKNKF
GITSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRPGLAGYGYDGIRCGSAQDCPK
LTYKTRFSFDNPNLVKTRGGLDRHTEPSRENSPIYKLKDHPWLGVSFNLGGEGTAKDGRSSSKLVSSFDENNSNSNQNLV
YTTEGHRISLGNWQRETTAMAYYLNAKLHLLDKKQIENIAPGKTVRLGVLKPSIDVKTQNTGLSGLLNFWSKWDIKDNGQ
IPVKLGLPQVKAGRCINKPNPNKNTKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPARPG
RHSLAALDTQNIKSREPNFNSRQTVIRLPGGVYKINPVKNGGRVAGFNGNDGKNDTFGIYKDRLVTPEADEWSEVLLPWT
ARYYGNDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDE
RSYELKLSYIPGTMERKDIENQDSTLAKELRTFAEKGYVGDRYGVDGGFVLRSITDDQDRQKHFFMFGAMGLGGRGAYAL
DLSKIDSNPVGVSMFDVQNESKNNGVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKQIASQENKTALYVYDLGNGSGSLI
KKIEVQGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSSDKPSEWTVRTIFQGTKPITSAPAVSRLADKRVVIF
GTGSDLSEEDVLDTKEQYIYGIFDDDKAANNVNASRGVLGSGLLEQHLTQENKTLFLNKRSDGSGSKGWAVKLTGGRRVT
VKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDHDSVAQYSGHKKTADGKSVPIGCMWKNGK
TACPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKR
LSWREVFF

Nucleotide


Download         Length: 3147 bp        

>NTDB_id=215993 BZG34_RS00325 WP_119160493.1 53239..56385(-) (pilC) [Neisseria gonorrhoeae strain RIVM0640]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGA
AGGGTCAATATAATCAATCAGCATTAAAGGACAAAGGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACAAATTC
GGCATCACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCAC
AGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATT
GGATTCATACCACCCGGCCCGGGCTGGCAGGCTACGGCTACGACGGTATCCGTTGCGGAAGTGCCCAAGACTGTCCCAAA
CTTACCTATAAAACCCGATTTTCCTTCGATAATCCCAACTTGGTAAAAACAAGAGGCGGGCTGGATAGGCACACAGAGCC
AAGCCGCGAAAATTCGCCCATTTACAAATTGAAGGATCATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGGCGAGGGTA
CCGCCAAAGATGGCAGATCATCCAGCAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTC
TATACGACAGAAGGCCACCGTATTTCCCTTGGCAACTGGCAGCGCGAAACGACCGCCATGGCCTATTATCTGAACGCCAA
GCTGCACCTGCTGGACAAAAAACAGATTGAAAATATCGCGCCAGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCA
TCGATGTGAAGACACAAAATACGGGGCTTAGCGGCTTGCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAG
ATTCCGGTCAAGCTCGGCCTGCCGCAAGTCAAAGCAGGCCGCTGCATCAATAAACCGAACCCCAATAAGAATACCAAAGC
CCCTTCGCCGGCCCTGACCGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGG
TTTCTACCTACCCCGGCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGACCCCGCCCGGCCCGGC
CGGCATTCCCTCGCCGCTTTGGATACGCAGAACATCAAAAGCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCG
ATTGCCGGGCGGCGTGTACAAGATCAACCCGGTCAAGAACGGCGGCCGGGTCGCGGGTTTTAATGGCAATGACGGCAAAA
ACGACACTTTCGGCATCTACAAGGACAGGCTCGTCACACCTGAGGCCGACGAGTGGAGCGAAGTGCTGCTGCCTTGGACG
GCTCGGTATTACGGTAATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATA
CAGCCAAAAATACCGCATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGA
TAACGGCGGTCGGCGGGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACGGATGAA
CGCAGCTACGAACTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAAACCAAGACTCCACCCTCGC
CAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCAGCA
TTACAGATGACCAAGACAGGCAAAAACATTTCTTTATGTTCGGCGCAATGGGCCTTGGCGGCAGAGGCGCATACGCCTTG
GATTTAAGCAAAATCGACAGCAACCCGGTCGGCGTTTCCATGTTTGATGTCCAAAACGAGAGTAAAAATAATGGCGTGAA
ATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATG
CGGCTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGTATGTGTATGATTTGGGAAACGGCAGTGGTAGTCTGATT
AAAAAAATCGAAGTGCAGGGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCGA
TATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCAGCGACAAGCCGTCCGAGTGGACTGTAC
GCACTATTTTCCAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTTATCTTC
GGCACGGGCAGCGATTTGAGTGAAGAGGATGTACTCGATACGAAAGAACAATATATTTACGGTATCTTTGACGACGATAA
GGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAGCGGGCTGCTCGAGCAACACCTTACTCAGGAAAATAAAA
CATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGGTGAAATTGACAGGCGGACGGCGCGTTACC
GTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCACCATCCGTAGCTATACGGGTAATGACAAATGCGGCGCGCAAAC
CGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATCACGATT
CGGTTGCGCAATATTCCGGCCATAAGAAAACCGCCGACGGCAAGTCCGTCCCTATAGGCTGTATGTGGAAAAACGGCAAA
ACCGCCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTTCCC
CGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCT
CCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGC
TTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(526-858)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

70.444

100

0.712

Multiple sequence alignment