Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CVT30_RS42800 Genome accession   NZ_CP024989
Coordinates   9740655..9741350 (+) Length   231 a.a.
NCBI ID   WP_045555738.1    Uniprot ID   A0ABU4N235
Organism   Streptomyces sp. AMCC400023     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9735655..9746350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT30_RS42785 (CVT30_43105) dhaK 9736326..9737318 (-) 993 WP_045555740.1 dihydroxyacetone kinase subunit DhaK -
  CVT30_RS42790 (CVT30_43110) - 9737696..9738934 (+) 1239 WP_237311803.1 heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein -
  CVT30_RS42795 (CVT30_43115) - 9739029..9740225 (+) 1197 WP_237270637.1 extracellular solute-binding protein -
  CVT30_RS46870 - 9740490..9740615 (+) 126 WP_256254855.1 hypothetical protein -
  CVT30_RS42800 (CVT30_43120) vraR 9740655..9741350 (+) 696 WP_045555738.1 response regulator transcription factor Regulator
  CVT30_RS42805 (CVT30_43125) - 9741525..9742397 (+) 873 WP_078853285.1 class I SAM-dependent methyltransferase -
  CVT30_RS42810 (CVT30_43130) - 9742577..9743770 (+) 1194 WP_045555737.1 alpha/beta hydrolase -
  CVT30_RS42815 (CVT30_43135) - 9743757..9744980 (+) 1224 WP_045555736.1 acyltransferase -
  CVT30_RS42820 (CVT30_43140) - 9745044..9745619 (-) 576 WP_234442421.1 GNAT family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24873.87 Da        Isoelectric Point: 6.8879

>NTDB_id=215947 CVT30_RS42800 WP_045555738.1 9740655..9741350(+) (vraR) [Streptomyces sp. AMCC400023]
MAGATAIRVVVVDDQDMVRSGFAALLSAQSDIDVVGDAPDGRIGVEVSRRTHPDVVLMDIRMPEMDGLEATRRLLDPPRG
VVHRPRVLMLTTFDIDDYVYEALHAGASGFLLKDAPVAELVQAVRVIAAGDALLAPSVTRRLIEDVARRRPVAPRAARLR
LNGLTPRETEVLALVAQGLSNTEIAARLVVAEQTVKTHMTRLLAKLGARDRAQLVVFAYESGLVVPGAPPV

Nucleotide


Download         Length: 696 bp        

>NTDB_id=215947 CVT30_RS42800 WP_045555738.1 9740655..9741350(+) (vraR) [Streptomyces sp. AMCC400023]
ATGGCTGGCGCTACGGCAATTCGGGTGGTCGTCGTCGACGACCAGGACATGGTGCGCTCGGGGTTCGCCGCGCTGCTGTC
CGCACAGAGCGACATCGACGTCGTGGGCGACGCCCCCGACGGCCGGATCGGCGTCGAGGTCAGCCGTCGTACCCACCCCG
ACGTCGTGCTGATGGACATACGGATGCCCGAGATGGACGGGCTGGAGGCGACCCGCCGACTGCTGGACCCGCCGCGCGGC
GTGGTGCACCGGCCCAGGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTCTACGAGGCGCTGCACGCCGGAGC
CAGCGGCTTTCTGCTCAAGGACGCGCCGGTCGCCGAACTCGTCCAGGCGGTACGGGTGATCGCCGCGGGTGACGCGCTCC
TCGCGCCGTCCGTCACCCGGCGTCTCATCGAGGACGTGGCCCGGCGGCGCCCCGTCGCGCCACGGGCCGCCCGGCTCCGC
CTGAACGGCCTCACACCCCGGGAGACGGAGGTCCTGGCCCTGGTGGCGCAGGGTCTGTCGAACACCGAGATCGCGGCGCG
GCTGGTGGTGGCCGAGCAGACCGTCAAGACGCACATGACCCGCCTGCTGGCCAAGCTCGGCGCCCGCGACCGGGCCCAAC
TCGTCGTCTTCGCCTACGAGTCGGGGCTGGTCGTGCCCGGGGCGCCGCCCGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-125)

Bacterial regulatory proteins, luxR family (GerE)

(164-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.269

94.805

0.372

Multiple sequence alignment