Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CVT30_RS30505 Genome accession   NZ_CP024989
Coordinates   6924066..6925799 (-) Length   577 a.a.
NCBI ID   WP_093789314.1    Uniprot ID   -
Organism   Streptomyces sp. AMCC400023     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6919066..6930799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT30_RS30495 (CVT30_30765) - 6920601..6921920 (+) 1320 WP_045557415.1 RNA polymerase sigma factor -
  CVT30_RS30500 (CVT30_30770) rcrQ 6922132..6924066 (-) 1935 WP_093789190.1 ABC transporter ATP-binding protein Regulator
  CVT30_RS30505 (CVT30_30775) rcrP 6924066..6925799 (-) 1734 WP_093789314.1 ABC transporter ATP-binding protein Regulator
  CVT30_RS30510 (CVT30_30780) - 6925938..6927392 (-) 1455 WP_078853407.1 FGGY family carbohydrate kinase -
  CVT30_RS30515 (CVT30_30785) - 6927472..6927777 (-) 306 WP_045557412.1 hypothetical protein -
  CVT30_RS30535 - 6929129..6929290 (+) 162 WP_177261767.1 hypothetical protein -
  CVT30_RS30540 (CVT30_30810) - 6929443..6930615 (-) 1173 WP_093789191.1 XdhC/CoxI family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 63113.27 Da        Isoelectric Point: 5.4090

>NTDB_id=215928 CVT30_RS30505 WP_093789314.1 6924066..6925799(-) (rcrP) [Streptomyces sp. AMCC400023]
MLIRLLRSHLRPYRTPITLLVLLQFVQTCATLYLPTLNADIIDEGVVEGDTGYILSFGALMIGISLVQVVCNIGAVYYGA
RTASAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLVVSAPIMCVGGIVLALGLDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRKANAELTDVSLGTGRMLAL
MFPIVMTVINLSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMAVMMATFMFMMMPRAEVCAERIQEVLDTDTSVVP
PVEPVRELRRHGFLEVRGAGFRYPGAEEPVLRSIEVVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTEGEVLVDGVDVR
TLDPKLLARTVGLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETADATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMTDN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=215928 CVT30_RS30505 WP_093789314.1 6924066..6925799(-) (rcrP) [Streptomyces sp. AMCC400023]
GTGCTCATACGATTGTTGAGAAGTCATCTCCGTCCCTACCGGACACCGATCACCCTGCTGGTGCTGCTGCAGTTCGTGCA
GACGTGCGCCACGCTGTATCTGCCCACGCTGAACGCGGACATCATCGACGAGGGCGTGGTGGAGGGGGACACGGGTTACA
TCCTGTCCTTCGGCGCGCTGATGATCGGTATCTCGCTGGTGCAGGTCGTCTGCAACATCGGGGCCGTGTACTACGGCGCC
CGCACCGCGTCGGCGGTCGGCCGGGACATCCGGGCCGCCGTGTTCGACCGGGTGCAGTCGTTCTCTGCGCGTGAGGTCGG
TCACTTCGGGGCCCCGTCGCTGATCACGCGGACGACGAACGACGTGCAGCAGGTCCAGATGCTGGTCCTCATGACGTTCA
CGCTGGTGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGCTGGCGCTCGGGCTGGACGTGCCGCTGTCGGGGGTG
CTCCTCGCCGTCGTACCGGTGCTCGGGATCTCCGTCAGCCTGATCGTGCGCCGGCTGCGCCCCCTGTTCCGCACGATGCA
GGAGCGGCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTGATCCGGGCCTTCGTGCGGGACG
ACTACGAGAAGGACCGGTTCCGGAAGGCGAACGCCGAGCTGACGGATGTGTCGCTGGGGACCGGGCGGATGCTGGCGCTG
ATGTTCCCGATCGTGATGACGGTGATCAATCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCATCGGATCGACAGCGG
CGGTATGGAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGGCGGTGATGATGGCCACCTTCA
TGTTCATGATGATGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCCAGGAGGTGCTGGACACCGACACGAGTGTGGTGCCG
CCGGTCGAGCCCGTACGGGAGCTGCGGCGCCACGGGTTCCTGGAGGTCCGGGGGGCGGGGTTCCGCTATCCGGGTGCCGA
GGAGCCGGTGCTCAGGTCCATCGAGGTCGTCGCGCGGCCCGGTGAGACGACCGCCGTCATCGGGTCCACGGGCAGCGGGA
AGTCGACGCTGCTGGGGCTCGTCCCCCGGCTGTTCGACGTCACCGAGGGCGAGGTGCTGGTGGACGGCGTCGACGTACGC
ACGCTCGATCCGAAGCTGCTGGCGAGGACGGTGGGGCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACCGTGGCGAC
GAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCGGCTGGAGAACGGGCTGGACTCCCCCATCGCGCAGGGCGGGACGAACGTGTCCGGCGGGCAGCGGCAGCGGCTC
GCCATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCCTTCTCCGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTGGCGCGGGAGACCGCCGACGCGACCGTGGTGATCGTGGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGTCACCACGAACTGATGACCGACAAC
GAGACGTACCGGGAGATCGTCCTCTCCCAGCTCACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.821

97.054

0.386