Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CVT30_RS30500 Genome accession   NZ_CP024989
Coordinates   6922132..6924066 (-) Length   644 a.a.
NCBI ID   WP_093789190.1    Uniprot ID   A0ABU4MXY2
Organism   Streptomyces sp. AMCC400023     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6917132..6929066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT30_RS30490 (CVT30_30760) dnaG 6918485..6920386 (+) 1902 WP_093789189.1 DNA primase -
  CVT30_RS30495 (CVT30_30765) - 6920601..6921920 (+) 1320 WP_045557415.1 RNA polymerase sigma factor -
  CVT30_RS30500 (CVT30_30770) rcrQ 6922132..6924066 (-) 1935 WP_093789190.1 ABC transporter ATP-binding protein Regulator
  CVT30_RS30505 (CVT30_30775) rcrP 6924066..6925799 (-) 1734 WP_093789314.1 ABC transporter ATP-binding protein Regulator
  CVT30_RS30510 (CVT30_30780) - 6925938..6927392 (-) 1455 WP_078853407.1 FGGY family carbohydrate kinase -
  CVT30_RS30515 (CVT30_30785) - 6927472..6927777 (-) 306 WP_045557412.1 hypothetical protein -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69574.03 Da        Isoelectric Point: 5.2168

>NTDB_id=215927 CVT30_RS30500 WP_093789190.1 6922132..6924066(-) (rcrQ) [Streptomyces sp. AMCC400023]
MAGPLARMAGAGAPDQHSMDFKGSGKRLLAQFRPERFTMYAMVLCAVLSVGLSVLGPWILGRATDLVFAGVVGREMPEGA
TKAEVLQAMRERGDGAVADMLSGTDFTPGKGIDFEAVGAVLLVALGIFLVAGLLMAVATRLSNRAINRTVYHMREQLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLVNSLLTIIGVLVMMFWVSPLLALVALVTVPVSFLVATRVGK
RSQPHFVAQWRVTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEENERLYEAGFKAQFNSGIMQPLMLFVSNINYVLVA
VVGGLRVATGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADAVPGVRPEELRGRVALE
GVSFRYEPDKPLIEDLSLVVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVASMSRDELRDGIGMVLQDT
WLFGGSIAENIAYGASAARKVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHEELLAAGGAYARLYRAQFAEAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=215927 CVT30_RS30500 WP_093789190.1 6922132..6924066(-) (rcrQ) [Streptomyces sp. AMCC400023]
ATGGCCGGGCCGTTGGCACGGATGGCGGGGGCCGGGGCACCCGATCAGCACTCCATGGACTTCAAGGGCTCCGGGAAGCG
GCTGCTGGCGCAGTTCAGGCCCGAGCGGTTCACGATGTACGCGATGGTCCTGTGCGCGGTGCTCAGCGTCGGGCTGTCGG
TGCTGGGGCCCTGGATCCTCGGCCGCGCGACCGACCTGGTCTTCGCGGGGGTCGTCGGGCGGGAGATGCCGGAGGGCGCC
ACCAAGGCCGAGGTCCTTCAGGCCATGCGGGAGCGCGGGGACGGCGCGGTCGCCGACATGCTGTCGGGCACGGACTTCAC
GCCGGGCAAGGGCATCGACTTCGAGGCCGTCGGCGCGGTGCTGCTGGTTGCCCTCGGCATCTTCCTGGTCGCGGGCCTGC
TGATGGCGGTGGCCACCCGGCTCTCCAACCGGGCGATCAACCGGACCGTCTACCACATGCGCGAACAGCTCCAGGCGAAG
CTCTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGGGAGGTGCTGAGCCGGGCGACCAACGACATCGACAA
CATCGGACAGACGTTGCAGCAGTCGATGGGGCAGCTCGTCAACTCGCTGCTCACCATCATCGGCGTACTGGTGATGATGT
TCTGGGTGTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGGTGTCGTTCCTGGTGGCCACGCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGGCGCAGTGGCGGGTGACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGACA
CACGCTCGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGGAGAACGAGCGGCTGTACGAGGCCG
GCTTCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGCTCTTCGTCTCCAACATCAACTATGTGCTGGTCGCG
GTCGTGGGCGGGCTGCGGGTCGCCACGGGCGCGCTGTCCATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCCATGGCGAACCTGGTGCAGTCGGGGGTCGCCTCCGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGAGGAGCAGGAGGCCGACGCGGTGCCCGGCGTACGGCCCGAGGAACTGCGGGGGCGGGTGGCGCTGGAG
GGGGTGTCCTTCCGGTACGAGCCCGACAAGCCGCTGATCGAGGACCTGTCGCTGGTCGTCGAGCCGGGGCACACGGTGGC
GATCGTGGGGCCGACGGGGGCGGGGAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACCGGGGGGCGGA
TCACGCTCGACGGGGTCGATGTCGCGTCCATGTCCCGGGACGAACTCCGGGACGGGATAGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGAAGCATCGCGGAGAACATCGCGTACGGGGCGTCCGCCGCGCGGAAGGTGACGCGGGGGGAGATCGA
GGAGGCGGCTCGGGCCGCGCACGCGGACCGGTTCATCCGGACGCTGCCGGACGGGTACGACACGGTGATCGACGACGAGG
GGACCGGGGTGAGCGCGGGTGAGAAGCAGCTCATCACGATCGCCCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTG
GACGAGGCGACGTCCTCGGTGGACACGCGTACGGAGGTGTTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGAC
GTCGTTCGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGTTCCATCGTGG
AGCAGGGGGCGCACGAGGAGTTGTTGGCGGCGGGTGGGGCGTATGCGCGGCTGTATCGGGCGCAGTTCGCGGAGGCGGTG
GCCGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.484

96.273

0.39