Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   NMB_RS03585 Genome accession   NC_003112
Coordinates   718479..719477 (-) Length   332 a.a.
NCBI ID   WP_002219588.1    Uniprot ID   -
Organism   Neisseria meningitidis MC58     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 713479..724477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS03565 (NMB0688) - 714856..715482 (-) 627 WP_002225494.1 phosphoribosylanthranilate isomerase -
  NMB_RS03570 (NMB0689) greB 715541..716032 (-) 492 WP_002225493.1 transcription elongation factor GreB -
  NMB_RS03575 (NMB0690) purF 716132..717676 (-) 1545 WP_002225492.1 amidophosphoribosyltransferase -
  NMB_RS12115 - 717822..717953 (-) 132 WP_256824360.1 hypothetical protein -
  NMB_RS03580 (NMB0691) - 717989..718486 (-) 498 WP_002225491.1 CvpA family protein -
  NMB_RS03585 (NMB0692) tpc 718479..719477 (-) 999 WP_002219588.1 cell division protein FtsN Machinery gene
  NMB_RS03590 (NMB0693) folC 719490..720764 (-) 1275 WP_002225490.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  NMB_RS03595 (NMB0694) - 720795..721241 (-) 447 WP_002225489.1 protein YgfX -
  NMB_RS03600 (NMB0695) - 721246..721605 (-) 360 WP_010980826.1 hypothetical protein -
  NMB_RS03605 (NMB0696) - 721678..722406 (-) 729 WP_002233691.1 amino acid ABC transporter ATP-binding protein -
  NMB_RS03610 (NMB0697) rsmA 722579..723358 (-) 780 WP_002225484.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  NMB_RS03615 (NMB0698) - 723555..724244 (+) 690 WP_002225483.1 uracil-DNA glycosylase family protein -

Sequence


Protein


Download         Length: 332 a.a.        Molecular weight: 35534.92 Da        Isoelectric Point: 10.1759

>NTDB_id=21592 NMB_RS03585 WP_002219588.1 718479..719477(-) (tpc) [Neisseria meningitidis MC58]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINERLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=21592 NMB_RS03585 WP_002219588.1 718479..719477(-) (tpc) [Neisseria meningitidis MC58]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGAGCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAG

Domains


Predicted by InterproScan.

(259-330)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934


Multiple sequence alignment