Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CVT30_RS25475 Genome accession   NZ_CP024989
Coordinates   5798968..5799966 (+) Length   332 a.a.
NCBI ID   WP_045556185.1    Uniprot ID   A0ABU4MNV8
Organism   Streptomyces sp. AMCC400023     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5793968..5804966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT30_RS25450 (CVT30_25680) - 5794367..5795905 (+) 1539 WP_237309724.1 MFS transporter -
  CVT30_RS25455 (CVT30_25685) - 5796047..5796553 (-) 507 WP_045556181.1 MarR family transcriptional regulator -
  CVT30_RS25460 (CVT30_25690) - 5796762..5797547 (+) 786 WP_045556182.1 class III extradiol ring-cleavage dioxygenase -
  CVT30_RS25465 (CVT30_25695) - 5797817..5798167 (+) 351 WP_237309726.1 DUF1330 domain-containing protein -
  CVT30_RS25470 (CVT30_25700) - 5798238..5798756 (-) 519 WP_045556184.1 GNAT family N-acetyltransferase -
  CVT30_RS25475 (CVT30_25705) rpoS 5798968..5799966 (+) 999 WP_045556185.1 sigma-70 family RNA polymerase sigma factor Regulator
  CVT30_RS25480 (CVT30_25710) - 5800973..5801947 (-) 975 WP_045556424.1 YafY family protein -
  CVT30_RS25485 (CVT30_25715) - 5802010..5803605 (+) 1596 WP_237309728.1 MFS transporter -
  CVT30_RS25490 (CVT30_25720) - 5803847..5804671 (+) 825 WP_193380339.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37062.68 Da        Isoelectric Point: 4.9639

>NTDB_id=215918 CVT30_RS25475 WP_045556185.1 5798968..5799966(+) (rpoS) [Streptomyces sp. AMCC400023]
MATRAVAARRSSASGRTDAARSVRASGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQILDGEEEARAD
ATREELEALVADSERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELGSNADRVSDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDGLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=215918 CVT30_RS25475 WP_045556185.1 5798968..5799966(+) (rpoS) [Streptomyces sp. AMCC400023]
ATGGCAACCCGTGCCGTCGCCGCTCGTCGTTCGTCCGCCTCCGGCCGGACCGACGCGGCTCGCAGCGTTCGCGCCTCTGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAAATCGCGCGTACACCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGATCATCGAGGCGGGTGTGTTCGCGCAGCAGATCCTCGACGGCGAGGAGGAGGCCAGGGCGGAC
GCCACCCGTGAGGAGCTCGAAGCCCTCGTCGCCGACAGCGAGCGGGCCAAGGACATCTTCATCCGGTCCAACCTGCGCCT
CGTCGTGGCCGTGGCCCGGCGGTACCCGCGCAGTGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGGAACGCCGGCCTGG
TCCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCCACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCGATAGCGGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTCGTCGAGGAGCTGGGCCGGATCCGCCGTGT
GCAGCGCGAGTTCAACCGGGAGCACGGGCGCGACCCGGAGCCCGCCGAGATCGCCGCCGAGCTCGGTTCCAACGCGGACC
GCGTCAGCGACGTCCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGCGATCTGCTGGAGGACACCTCCGCCGTCTCGCCCGAGCAGTCCGTGCTGACGCTGCTGCGCAGCGAGGAGCTGGACGG
CCTCATCGGGCGCCTCGACCAGCGCACCGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGCACCC
TCACCGAGGTCGGCAAGGAGCACGGTCTCACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTCGAACTGAAG
AAGCTCGCCCGGGACACCGGCTTCGACGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70, region 4 (Sigma70_r4)

(269-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361

Multiple sequence alignment