Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CVO91_RS09515 Genome accession   NZ_CP024974
Coordinates   1867761..1869422 (-) Length   553 a.a.
NCBI ID   WP_002942943.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1862761..1874422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS13420 (CVO91_09485) - 1862786..1863493 (-) 708 WP_100664905.1 transposase -
  CVO91_RS09490 (CVO91_09490) - 1863700..1864829 (+) 1130 Protein_1785 site-specific integrase -
  CVO91_RS09495 (CVO91_09495) - 1865075..1865350 (-) 276 WP_002942953.1 HU family DNA-binding protein -
  CVO91_RS09500 (CVO91_09500) - 1865440..1866036 (-) 597 WP_002942951.1 YpmS family protein -
  CVO91_RS09505 (CVO91_09505) - 1866008..1866841 (-) 834 WP_033875538.1 SGNH/GDSL hydrolase family protein -
  CVO91_RS09510 (CVO91_09510) - 1866834..1867667 (-) 834 WP_002942944.1 DegV family protein -
  CVO91_RS09515 (CVO91_09515) recN 1867761..1869422 (-) 1662 WP_002942943.1 DNA repair protein RecN Machinery gene
  CVO91_RS09520 (CVO91_09520) - 1869425..1869850 (-) 426 WP_002942941.1 arginine repressor -
  CVO91_RS09525 (CVO91_09525) - 1869843..1870664 (-) 822 WP_002942939.1 TlyA family RNA methyltransferase -
  CVO91_RS09530 (CVO91_09530) - 1870657..1871526 (-) 870 WP_002942937.1 polyprenyl synthetase family protein -
  CVO91_RS09535 (CVO91_09535) - 1871526..1871741 (-) 216 WP_002942935.1 exodeoxyribonuclease VII small subunit -
  CVO91_RS09540 (CVO91_09540) xseA 1871716..1873059 (-) 1344 WP_002942934.1 exodeoxyribonuclease VII large subunit -
  CVO91_RS09545 (CVO91_09545) - 1873223..1874083 (-) 861 Protein_1796 ISAs1 family transposase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62729.91 Da        Isoelectric Point: 4.6542

>NTDB_id=215839 CVO91_RS09515 WP_002942943.1 1867761..1869422(-) (recN) [Streptococcus suis strain CZ130302]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=215839 CVO91_RS09515 WP_002942943.1 1867761..1869422(-) (recN) [Streptococcus suis strain CZ130302]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTTTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTTAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAGTCCCAACACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAGTTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCTGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCAATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGTGATGTGGTGGACAATCTAGACT
TTGATGGCAATCGTCTCTTGCAATTGGAAAGTCGCTTGGATTTGCTCAATACCATTACGAAGAAATATGGCGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATAAGCGAAGAATACAATCTATTGACAGGGAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAGCGAGCAGGTCAACTTAGCCAATCACGCCATGAATTGGCAG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACCAAA
GGAAAATTTAATCGAGAAGGAAATGAAACGGTAGAATTTTACATCTCTACTAACCCTGGAGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGTTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGCAAAGAAGGTAAAACTT
CTATCGTCTTTGATGAGGTGGATACAGGAGTTTCAGGTCGTGTAGCTCAGGCTATTGCCCAGAAAATTTATAAAATCGGA
CAGTATGGGCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCTGATGAACATTCGACCGTTTCCCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45