Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CVO91_RS06065 Genome accession   NZ_CP024974
Coordinates   1188646..1190415 (+) Length   589 a.a.
NCBI ID   WP_002940678.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183646..1195415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS06035 (CVO91_06035) - 1184445..1185212 (+) 768 WP_002940686.1 class I SAM-dependent methyltransferase -
  CVO91_RS06040 (CVO91_06040) pcp 1185209..1185856 (+) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  CVO91_RS06045 (CVO91_06045) - 1185856..1186164 (+) 309 WP_002940684.1 DUF4298 domain-containing protein -
  CVO91_RS06050 (CVO91_06050) rpsP 1186289..1186561 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  CVO91_RS06055 (CVO91_06055) - 1186583..1186825 (+) 243 WP_002940680.1 KH domain-containing protein -
  CVO91_RS06060 (CVO91_06060) rcrP 1186901..1188637 (+) 1737 WP_002940679.1 ABC transporter ATP-binding protein Regulator
  CVO91_RS06065 (CVO91_06065) rcrQ 1188646..1190415 (+) 1770 WP_002940678.1 ABC transporter ATP-binding protein Regulator
  CVO91_RS06070 (CVO91_06070) - 1190472..1191395 (-) 924 WP_002940677.1 polysaccharide deacetylase family protein -
  CVO91_RS06075 (CVO91_06075) - 1191500..1192786 (+) 1287 WP_002940676.1 homoserine dehydrogenase -
  CVO91_RS06080 (CVO91_06080) thrB 1192790..1193650 (+) 861 WP_002940675.1 homoserine kinase -
  CVO91_RS06085 (CVO91_06085) murB 1193885..1194790 (+) 906 WP_002940674.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65760.79 Da        Isoelectric Point: 5.5789

>NTDB_id=215822 CVO91_RS06065 WP_002940678.1 1188646..1190415(+) (rcrQ) [Streptococcus suis strain CZ130302]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLAGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFTLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=215822 CVO91_RS06065 WP_002940678.1 1188646..1190415(+) (rcrQ) [Streptococcus suis strain CZ130302]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTATATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTGTCCAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAAGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATAACT
GCTGACTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTATGTAGTCGTGGCCTTACTTGCTGGTCTGAAAGTTCTTGCAGGCACATTGACGGTCGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTAGAACGCATCTTTTCAGTCTTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTTGAGTTGACAGCTAGTTTGACCGG
ACAAGTCAGTTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGAAACTTTACTCTTGATGTGAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTGCTCATGCGTTTCTATGAT
GTGACATCAGGTGCTATCAAGGTAGATGGTCAGGATATACGGAATATTTCTCGTCAATCCTACCGCAGTCAATTTGGTAT
GGTATTGCAAGATGCTTGGCTCTACGAAGGGACCATCAAAGAAAACCTGCGTTTTGGACGCCTGGATGCGACGGATGAGG
AAATTGTAGAGGCTGCTAAAGCTGCCAACGTTGACCATTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACTATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCCTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATTGCCCACCGCTTATCAACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGATAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.559

100

0.436