Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CVO91_RS06060 Genome accession   NZ_CP024974
Coordinates   1186901..1188637 (+) Length   578 a.a.
NCBI ID   WP_002940679.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181901..1193637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS06035 (CVO91_06035) - 1184445..1185212 (+) 768 WP_002940686.1 class I SAM-dependent methyltransferase -
  CVO91_RS06040 (CVO91_06040) pcp 1185209..1185856 (+) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  CVO91_RS06045 (CVO91_06045) - 1185856..1186164 (+) 309 WP_002940684.1 DUF4298 domain-containing protein -
  CVO91_RS06050 (CVO91_06050) rpsP 1186289..1186561 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  CVO91_RS06055 (CVO91_06055) - 1186583..1186825 (+) 243 WP_002940680.1 KH domain-containing protein -
  CVO91_RS06060 (CVO91_06060) rcrP 1186901..1188637 (+) 1737 WP_002940679.1 ABC transporter ATP-binding protein Regulator
  CVO91_RS06065 (CVO91_06065) rcrQ 1188646..1190415 (+) 1770 WP_002940678.1 ABC transporter ATP-binding protein Regulator
  CVO91_RS06070 (CVO91_06070) - 1190472..1191395 (-) 924 WP_002940677.1 polysaccharide deacetylase family protein -
  CVO91_RS06075 (CVO91_06075) - 1191500..1192786 (+) 1287 WP_002940676.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65158.43 Da        Isoelectric Point: 5.1965

>NTDB_id=215821 CVO91_RS06060 WP_002940679.1 1186901..1188637(+) (rcrP) [Streptococcus suis strain CZ130302]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYVAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFTGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=215821 CVO91_RS06060 WP_002940679.1 1186901..1188637(+) (rcrP) [Streptococcus suis strain CZ130302]
ATGAATCTGATTTGGACCTATTTGAAAAAATACCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTGTTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGCATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGTAGCTGGAAAATTG
ACTACAAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCACGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTGTTGAAACTAG
GTATCATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCGTTTCTGGTTTTTGTTATTTTCTACGTGGCAACCAAAACTCGTCCTCTTTCTGAAAAGCAACAGAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTAGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCTATCTCTATTTCTAAGAATGAG
GACGGCATAACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAGTC
GCCTGTTCTGCATAATATTTCCTTTAAGGCTAAGCCAGGGGAAACCATTGCCTTTACCGGCTCAACGGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTGAAACAGCCCGATATTTATATTTTTGATGACTCTTTCTCAGCCTTGGACTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCACAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAATGAAGGTGAAATCGTTGGCCGCGGCACTCATAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.833

100

0.393