Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   CVO91_RS04445 Genome accession   NZ_CP024974
Coordinates   848941..851157 (+) Length   738 a.a.
NCBI ID   WP_002941387.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 843941..856157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS04430 (CVO91_04430) - 843993..844748 (+) 756 WP_002941402.1 SDR family oxidoreductase -
  CVO91_RS04435 (CVO91_04435) - 844892..847066 (+) 2175 WP_002941399.1 copper-translocating P-type ATPase -
  CVO91_RS04440 (CVO91_04440) cls 847240..848787 (+) 1548 WP_002941390.1 cardiolipin synthase -
  CVO91_RS04445 (CVO91_04445) recJ 848941..851157 (+) 2217 WP_002941387.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  CVO91_RS13030 (CVO91_04450) - 851184..851447 (+) 264 WP_002941385.1 hypothetical protein -
  CVO91_RS13340 - 851398..852057 (+) 660 Protein_812 DUF3114 domain-containing protein -
  CVO91_RS04465 (CVO91_04465) - 852329..852841 (+) 513 WP_002941373.1 adenine phosphoribosyltransferase -
  CVO91_RS04470 (CVO91_04470) metA 852945..853886 (+) 942 WP_002941370.1 homoserine O-succinyltransferase -
  CVO91_RS04475 (CVO91_04475) - 853896..854570 (+) 675 WP_002941367.1 DnaD domain-containing protein -
  CVO91_RS04480 (CVO91_04480) - 854572..855255 (+) 684 WP_002941360.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  CVO91_RS04485 (CVO91_04485) - 855245..856039 (+) 795 WP_002941358.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 82485.20 Da        Isoelectric Point: 4.4853

>NTDB_id=215814 CVO91_RS04445 WP_002941387.1 848941..851157(+) (recJ) [Streptococcus suis strain CZ130302]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQLALMIDSKN
VERKDVVQAIYDEAKTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVE
GIQLYNIRGKQHNLPEGVPILDMADLSNLAGADSLVLANLPENLSDLKSVFQKHDFQAVYFKNEMATPYYLDGYGSREQF
AKLYKTIYQFKEFDVRYKLAELANYLKIKQPLLVKMIQIFQELGFVTITDGVMTVNADAEKREIADSQIYQDLKKLVIEQ
ELMALGTVQEIYDWLRKP

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=215814 CVO91_RS04445 WP_002941387.1 848941..851157(+) (recJ) [Streptococcus suis strain CZ130302]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTGGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGTATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCTAACCGTTTCACAGATGGCTATGGGCCGAATCAGTCAGTTTACAAGTATT
TTATCGAGCAACAGGGGATTTCTCTTATTGTGACGGTGGACAATGGTGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCCGAGGGAAATTATCCCTTCAAACATTTGGCAGGCTGCGGTGTAGCCTTCAAATTAGCCTGTGCTCTTCTTG
AAACTGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTACAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGACGACC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAACTTGCCCTCATGATTGACAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTTCGTCAGGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCAGCAACCTGTTATCG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCGGTTGAAGCGGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTGACCTTGACAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTATGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAATCAGCAAGAACCATGGGGCAGAATAATGCCCATTTGAAATTACGCATTAC
TAAAGGTGCTGCAGGATTTGATGTCGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGCCTCCAACTCATGCTGGTTGACGCCCGTGTAGAA
GGTATCCAGCTTTACAATATCCGTGGCAAACAGCACAACCTTCCAGAAGGAGTGCCCATTTTGGATATGGCTGATTTGTC
TAATCTAGCAGGTGCTGATTCGCTTGTCTTAGCCAATTTACCCGAAAATCTATCGGACCTCAAATCCGTTTTCCAAAAAC
ATGATTTTCAAGCGGTTTATTTCAAGAATGAAATGGCGACTCCCTATTACTTAGACGGTTATGGCAGTCGGGAGCAATTT
GCCAAGCTCTATAAGACCATTTATCAGTTTAAGGAATTTGATGTCCGTTACAAATTGGCAGAATTGGCCAACTACTTGAA
AATCAAGCAGCCGCTCTTGGTCAAAATGATTCAAATTTTCCAAGAACTTGGCTTTGTGACCATTACAGACGGGGTCATGA
CGGTCAATGCGGATGCTGAAAAACGAGAAATTGCGGATAGTCAGATCTATCAAGACCTGAAAAAACTGGTCATAGAACAG
GAACTCATGGCTCTGGGGACAGTTCAGGAAATCTATGATTGGCTTCGCAAACCTTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-432)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(590-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.418

99.729

0.722
  recJ Bacillus subtilis subsp. subtilis str. 168

38.748

100

0.394